Email, calendars, task management, and automation (7.8K skills)
Workflow for outbreak-style pathogen genomics, surveillance, lineage assignment, and transmission-oriented comparative analysis.
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Workflow for packaging analysis outputs into reproducible reports, clean tables, and publication-ready figure exports.
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Workflow for ribosome profiling, P-site aware preprocessing, periodicity checks, ORF detection, and translation efficiency analysis.
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Browse and install community skills from the BioClaw Skills Hub. Use when a user's task is not covered by built-in skills, or when the user asks about available skills, advanced workflows, or specialized analysis pipelines. Triggers on "skills hub", "more skills", "install skill", "community skills", "find a skill for".
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Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.
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Workflow for constraint-based metabolic modeling, context-specific models, gene essentiality, and systems-level interpretation.
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Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready maps.
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Workflow for small RNA and miRNA preprocessing, quantification, differential analysis, and target-oriented interpretation.
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Workflow for foundational sequence parsing, conversion, compression handling, and interval-aware file validation.
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Workflow for gene and transcript quantification from RNA-seq reads using alignment-based or alignment-free tools.
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Workflow for sequencing read QC, trimming, contamination screening, and pre-alignment cleanup.
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Workflow for fine-mapping, colocalization, mediation, pleiotropy analysis, and Mendelian randomization.
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Workflow for amplicon microbiome analysis including denoising, taxonomy assignment, diversity analysis, and differential abundance.
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Workflow for copy-number estimation, segmentation, annotation, and visualization in sequencing-based assays.
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Workflow for de novo assembly, scaffolding, polishing, contamination review, and assembly QC.
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Workflow for methylation alignment or calling, DMR analysis, methylation QC, and locus-level interpretation.
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Workflow for integrating matched or partially matched omics layers into shared latent structure and cross-modal interpretation.
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Workflow for nanopore or PacBio long-read QC, alignment, polishing, methylation-aware analysis, and structural variant discovery.
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Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.
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Workflow for Hi-C and related 3D genomics analyses including compartments, loops, TADs, differential contacts, and visualization.
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Workflow for regulatory network inference, regulon scoring, perturbation-aware comparison, and network visualization.
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Workflow for RNA modification analysis such as m6A peak calling, differential modification, and transcript-level visualization.
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Workflow for orthology, synteny, ancestral reconstruction, and evolutionary comparison across genomes.
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Python-first workflow for bulk RNA-seq expression intake, normalization, sample QC, and downstream-ready matrices.
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