Research, academic papers, education, and exam prep (4.5K skills)
Create and train AI learning plugins with AgentDB's 9 reinforcement learning algorithms. Includes Decision Transformer, Q-Learning, SARSA, Actor-Critic, and more. Use when building self-learning agents, implementing RL, or optimizing agent behavior through experience.
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Implement persistent memory patterns for AI agents using AgentDB. Includes session memory, long-term storage, pattern learning, and context management. Use when building stateful agents, chat systems, or intelligent assistants.
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Comprehensive Artificial Life skill combining ALIFE2025 proceedings, classic texts (Axelrod, Epstein-Axtell), ALIEN simulation, Lenia, NCA, swarm intelligence, and evolutionary computation. 337 pages extracted, 80+ papers, 153 figures.
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ALIFE 2025 Proceedings - 337 pages, 80+ papers on artificial life, evolution, emergence, cellular automata, neural networks, agent-based models. Full Mathpix extraction with equations and figures.
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Anna's Archive integration for academic paper and book retrieval. Search shadow libraries (Library Genesis, Z-Library, Sci-Hub) via unified API with GF(3) balanced caching.
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Comprehensive research corpus covering 40+ agentic coordination protocols and ecosystems (MCP, A2A, ANP, UCP, ACP, AGNTCY, NANDA, FIPA, WoT, etc.) with emphasis on identity architectures, governance bodies, and interoperability convergence patterns.
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Search academic papers across arXiv, PubMed, Semantic Scholar, bioRxiv, medRxiv, Google Scholar, and more. Get BibTeX citations, download PDFs, analyze citation networks. Use for literature reviews, finding papers, and academic research.
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Opens a deliverable (talk, course module, paper, book chapter, or referee report) for AI-assisted work across sessions. Interviews the author for the manifest, then scaffolds deliverable.yml, an append-only HANDOFF.md, a numbered planning/ wiki with open questions, an inbox/ for dictated braindumps, a gitignored checks/, and the house deck template for talks. Use when starting deadline-driven work that spans sessions, or when asked to open a deliverable, set up a talk, paper, or module for the pipeline, or make a manifest. Not for one-off tasks.
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Start-of-session situational report for a research or code repository. Reads the handoff, log, or status files the project actually keeps, checks live git state, and reports the objective, verified baseline, open tasks, blockers, and next actions, flagging where the documents and the repository disagree. Use when resuming work after time away or before changing anything. Its end-of-session twin is finished.
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End-of-session closure for a research or code repository. Records what changed into the project's own handoff and log files, separating verified work from work merely attempted, and reports what is left uncommitted. Use when wrapping up a session so the next one can resume without re-deriving state. Its start-of-session twin is sitrep.
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Reviews a whole deliverable (talk, course module, paper, chapter, or referee report) against its manifest without rewriting it. Runs a deterministic gate for build, citations, numbers, facts, and leaks and stops on failure, then runs a finder over each section and a strong-model pass over the whole work, and adjudicates into checks/<date>/findings.json and report.md with anchored findings, severities, and honest NOT CHECKED coverage within a dollar budget. Use when asked to lint or review the whole talk, module, or paper, for a pre-ship review, or for the night shift. Revision stays serial and author-led.
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Interviews a researcher in rounds until an idea, design, or draft has no unexamined decision — numbered questions, each with why it matters and a recommended answer, facts looked up rather than asked, and settled decisions written to a file. Stages are idea (topic or hunch to a falsifiable question and contribution claim), design (estimand, identification, sample and power, measurement, analysis plan, pre-registration, venue), and defend (reviewer objections to a finished design or draft). Use when the user says "grill me", asks to stress-test or poke holes in an idea, design, or plan, asks what they are assuming, or brings an idea that is not yet a design. --plan grills software or process plans.
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Turns raw captures (dictated braindumps in a deliverable's inbox/, or recent macwhspr dictation-log entries) into proposed planning-wiki changes, shown as one unified diff. Classifies each statement as a decision, evidence claim, question, task, or dropped item, traces it to its capture paragraph, tags unconfirmed names, numbers, and citations UNRESOLVED, and writes decisions only with the author's assent. Edits only the planning wiki, never source files. Use when asked to intake, absorb notes, or process the inbox, or after dictating notes from a talk, meeting, or reading session.
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Plans a research project as a decision map that persists across sessions, resolving one ticket per session until the design is defensible and pre-registerable. The map lives as Markdown in the repository, literature sweeps run as parallel research tickets, and the resolved map compiles into a pre-analysis plan. Use at project start, when a design has more open decisions than one conversation can hold, or when planning restarts each session. Not for executing analyses or writing the paper.
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Typesets a working paper or journal submission in house-style LaTeX from Markdown, Word (.docx), TeX, ODT, RTF, or HTML. Converts with pandoc, wraps the body in an EB Garamond template, builds the PDF with latexmk, and sets journal-specific spacing, page limits, anonymization, disclosures, and citation style. Use to format or convert a paper to LaTeX, make a working paper, or prepare a submission to a named journal.
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Scaffolds or audits a research-project repository organized around its source library (original PDFs, tracked Markdown conversions, drop zone, bibliography, intake pipeline) plus the analysis, manuscript, and review folders the project type needs. Use when starting, structuring, or auditing a research repo or its sources folder. Single-PDF intake goes to process-source, replication packages to replication-package.
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Provides a pre-submission manuscript audit covering argument, numerical consistency, references and DOIs, writing, figures, CONSORT flow, pre-registration, and the replication archive. Use before paper submission or when a draft needs an adversarial, quote-grounded review with a journal-readiness checklist. Add `--codex` to run the specification independently on Claude and Codex, GPT-6 Astra, and cross-check findings.
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Builds or audits a literature review, producing an evidence map, the closest prior work, source clusters, a gap verdict, and a synthesis plan for the introduction. Use when the user asks whether a contribution is novel, who has studied a question, what the literature establishes, or how to organize a review, or wants a reading list, Zotero export, or pile of papers turned into one. For systematic reviews or meta-analyses it produces the protocol scaffold and routes registration (PROSPERO or OSF) and screening to dedicated tools.
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Checks whether each claim in a manuscript is supported by the source it cites, reading the project's per-source Markdown knowledge base. Flags contradicted, unsupported, overclaimed, out-of-scope, and misattributed claims with verbatim source quotes. Runs citation-check first, and stops at a pre-flight gate when the knowledge base is missing, incomplete, or holds unconverted PDFs. Use to verify that a draft's claims match the sources it cites.
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Plans a research project as a durable decision map, resolving one design decision per session until the design is defensible and pre-registerable. Use at project start, when a design has more open decisions than one conversation holds, or when planning keeps restarting. Not for running analyses or writing the paper.
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Audit a manuscript's citations for fabricated sources, DOIs that resolve to the wrong work, in-text and reference-list mismatches, style, and claim support, verified against Crossref and OpenAlex. Use to check citations, references, a .bib file, or DOIs.
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Typeset a working paper or journal submission in house-style LaTeX from Markdown, Word, TeX, ODT, RTF, or HTML. Use to convert drafts, build PDFs, or prepare journal-specific spacing, limits, anonymization, disclosures, and citations.
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Audits a manuscript's citations for fabricated or nonexistent sources, DOIs that resolve to a different work, mismatches between in-text citations and the reference list, APA 7 or journal style, and whether each source supports the claim it is attached to. Checks entries against Crossref, OpenAlex, and DataCite and labels anything it could not verify NOT CHECKED. Use to check citations, references, a .bib file, or DOIs, or when a source may be AI-invented. Figures and tables go to figure-table-audit.
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Run a pre-submission manuscript audit covering argument, numerics, references, writing, figures, methods, preregistration, and replication readiness. Add --codex for a cross-model pass in which Codex and Claude review independently and verify each other's findings.
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