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Search and synthesize answers from the compiled Obsidian wiki, including cited and multi-hop answers. Use for questions about existing wiki knowledge or fast index-only lookups, and for challenge requests ("challenge this", "argue against X", "poke holes in my plan") that look for the vault's own evidence against a plan. Supports named-vault routing such as wiki-query @work; not for ingesting new sources.

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Find recurring concept combinations across the wiki that lack an explicit synthesis page, then create cross-cutting synthesis pages. Use for knowledge synthesis after the vault has accumulated enough material.

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Sync knowledge from the current project into the Obsidian wiki. Use when work already in the current project should be distilled into the vault; named-vault routing includes @work update wiki. wiki-capture saves the current conversation and wiki-ingest handles external/new sources.

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Ingest Claude Code conversation/session history into Obsidian as distilled knowledge. Use for importing or mining past Claude sessions, .claude data, project/session history, or audit logs.

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Ingest GitHub Copilot CLI/session history into Obsidian as distilled knowledge. Use for importing or mining Copilot history; not for general Copilot help, simple session search, or backup.

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Run or configure the daily wiki maintenance cycle: check source freshness, refresh the index and hot.md, and manage its scheduled 9 AM launchd/systemd/cron reminder. Use for daily or morning wiki refresh or scheduler setup and verification.

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Ingest OpenClaw session/history data into Obsidian as distilled knowledge. Use for importing or mining ~/.openclaw sessions, memory files, or logs; use wiki-agent for targeted topic-only cross-agent recall.

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Search the session-brain graph for a past agent session by topic and load the winning transcript into the current conversation. Use for finding which session handled X, when Y was last worked on, or whether this was done before. Read-only; requires a session-brain graph.

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Search one AI agent's raw history for a specific topic, ingest only matching sessions, and return a synthesized answer. Use for targeted cross-agent recall; use wiki-history-ingest for bulk archival ingestion.

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Turn the current conversation or finding into a structured permanent wiki note. Use for save/capture/preserve requests; QUICK MODE writes a fast _raw/ note. Supports named-vault routing such as @research save this. This captures current discussion, not external source ingestion.

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Produce a token-bounded, citation-ready context slice from an existing Obsidian vault for a downstream agent or task. Use for "/wiki-context-pack", "use my vault as context", "context slice for X", "pack the wiki for my agent", or "bounded context for Y".

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Archive and rebuild wiki knowledge from source, or restore a prior archive. Use for full restart/recovery when incremental repair is inappropriate; this is broader and more destructive than ordinary update or lint.

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Initialize or repair an Obsidian wiki vault's required structure and configuration. Use for new-vault setup, .env/config creation, reconfiguration, or broken setup recovery.

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Review staged wiki writes and promote accepted pages to final locations when WIKI_STAGED_WRITES is enabled. Use for staging approval/commit; rejected pages return to _raw/ for editing.

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Ingest Pi coding-agent session history into Obsidian as distilled knowledge. Use for importing or mining ~/.pi/agent/sessions or Pi conversation logs; use wiki-agent for targeted topic-only recall.

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Import a wiki graph into the current vault from graph.json or an OKF/markdown bundle. Use for transferring previously exported wiki content between vaults; pair with wiki-export for the reverse direction.

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Step 1 of the PaperOrchestra pipeline (arXiv:2604.05018). Convert (idea.md, experimental_log.md, template.tex, conference_guidelines.md) into a strict JSON outline containing a plotting plan, literature search plan (Intro + Related Work), and section-level writing plan with citation hints. TRIGGER when the orchestrator delegates Step 1 or when the user asks to "outline a paper from raw materials" or "generate the paper structure".

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Run the four paper-quality autoraters from PaperOrchestra (arXiv:2604.05018, App. F.3) — Citation F1 (P0/P1 partition + Precision/Recall/F1), Literature Review Quality (6-axis 0-100 with anti-inflation rules), SxS Overall Paper Quality (side-by-side), and SxS Literature Review Quality (side-by-side). TRIGGER when the user asks to "score this paper draft", "evaluate against the benchmark", "compare two papers", or "run the autoraters".

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Reverse-engineer raw materials (Sparse idea, Dense idea, experimental log) from an existing AI research paper to build a benchmark case for evaluating paper-writing pipelines. Replicates the PaperWritingBench dataset construction procedure from arXiv:2604.05018 §3 / App. C. TRIGGER when the user asks to "build a benchmark case from this paper", "reverse-engineer raw materials", or "evaluate my pipeline against PaperWritingBench".

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Step 2 of the PaperOrchestra pipeline (arXiv:2604.05018). Execute the visualization plan from outline.json — render plots and conceptual diagrams from experimental_log.md and idea.md, optionally refine via VLM critique loop, and produce context-aware captions. Runs in parallel with the literature-review-agent. TRIGGER when the orchestrator delegates Step 2 or when the user asks to "generate the figures for my paper" or "render the plots from this experiment log".

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Step 5 of the PaperOrchestra pipeline (arXiv:2604.05018). Iteratively refine drafts/paper.tex by simulating peer review and applying targeted revisions, with strict accept/revert halt rules, deterministic 0-100 decision bands (Accept/Minor/Major/Reject) that drive a target-met early stop, and a Devil's Advocate concession-threshold guard that blocks acceptance on unresolved critical findings. Maintains a worklog and snapshots each iteration so revert is real, not symbolic. TRIGGER when the orchestrator delegates Step 5 or when the user asks to "refine the draft", "iterate on the paper", or "run peer review on this paper".

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Pre-pipeline aggregator that scans AI agent cache directories (.claude, .cursor, .antigravity, .openclaw) or any user-specified directory for experimentation logs, extracts insights and numeric results, and formats them as PaperOrchestra-ready inputs (idea.md + experimental_log.md). TRIGGER when the user says "aggregate my agent logs for paper writing", "extract experiments from my coding agent history", "prepare PaperOrchestra inputs from my cache", "turn my agent logs into a paper", mentions a folder or directory they want to use as the basis for a paper, or wants to run PaperOrchestra but only has scattered agent experiment histories rather than structured inputs. Run this BEFORE paper-orchestra. Also called automatically by paper-orchestra when workspace/inputs/idea.md or workspace/inputs/experimental_log.md are missing.

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Step 3 of the PaperOrchestra pipeline (arXiv:2604.05018). Execute the literature search strategy from outline.json — discover candidate papers via web search, verify them through Semantic Scholar (Levenshtein > 70 fuzzy title match, temporal cutoff, dedup by paperId), cross-corroborate against Crossref + OpenAlex to flag hallucinated citations, build a BibTeX file, and draft Introduction + Related Work using ≥90% of the verified pool. Runs in parallel with the plotting-agent. TRIGGER when the orchestrator delegates Step 3 or when the user asks to "find citations for my paper", "draft the related work", or "build the bibliography".

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Step 4 of the PaperOrchestra pipeline (arXiv:2604.05018). ONE single multimodal LLM call that drafts the remaining paper sections (Abstract, Methodology, Experiments, Conclusion), extracts numeric values from experimental_log.md into LaTeX booktabs tables, splices the generated figures from Step 2, and merges everything into the template that already contains Intro + Related Work from Step 3. TRIGGER when the orchestrator delegates Step 4 or when the user asks to "write the methodology and experiments sections" or "fill in the rest of the paper".

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