METAINFORMANT rules for directory examples/simulation. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory .github/workflows. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory .github. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/doc/01_infrastructure. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/doc/03_data_management. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/config/amalgkit. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/config. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/doc. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/docs/manuscript. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/notebooks. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/doc/05_cross_species. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/doc/02_workflow. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/doc/00_setup. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory Plans. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory projects/hymenoptera_amalgkit/doc/04_troubleshooting. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/visualization. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/templates. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/singlecell. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/networks. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/multiomics. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/ml. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/math. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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METAINFORMANT rules for directory examples/information. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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