pjt222

Add Rcpp or RcppArmadillo integration to an R package for high-performance C++ code. Covers setup, writing C++ functions, RcppExports generation, testing compiled code, and debugging. Use when an R function is too slow and profiling confirms a bottleneck, when you need to interface with existing C/C++ libraries, or when implementing algorithms (loops, recursion, linear algebra) that benefit from compiled code.

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Scaffold a new puzzle type across all 10+ pipeline integration points in jigsawR. Creates the core puzzle module, wires it into the unified pipeline (generation, positioning, rendering, adjacency), adds ggpuzzle geom/stat layers, updates DESCRIPTION and config.yml, extends the Shiny app, and creates a comprehensive test suite. Use when adding a completely new puzzle type to the package or following the 10-point integration checklist to ensure nothing is missed end-to-end.

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Master skill composing the 5-step synoptic cycle for panoramic synthesis across multiple domains. Orchestrates meditate, expand-awareness, observe, awareness, integrate-gestalt, and express-insight into a coherent process that produces unified understanding rather than sequential compromise. Use when a problem genuinely spans 3+ domains and the interactions between domains matter more than depth in any one, when sequential analysis feels like compromise rather than integration, or before major architectural decisions affecting multiple stakeholders.

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Execute structural metamorphosis using strangler fig migration, chrysalis phases, and interface preservation. Covers transformation planning, parallel running, progressive cutover, rollback design, and post-metamorphosis stabilization for system architecture evolution. Use when assess-form has classified the system as READY for transformation, when migrating from monolith to microservices, when replacing a core subsystem while dependents continue operating, or when any architectural change must be gradual rather than big-bang.

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One to three sentences describing what this skill accomplishes, followed by key activation triggers. This field is the primary mechanism agents use to decide whether to activate the skill — it is read during discovery before the full body is loaded. Start with a verb. Include the most important "when to use" conditions inline. Max 1024 characters.

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Four-stage alchemical code transmutation — nigredo (decomposition), albedo (purification), citrinitas (illumination), rubedo (synthesis) — with meditate and heal checkpoints between stages. Transforms tangled or legacy code into optimized, well-structured output through systematic material analysis. Use when transforming legacy code into modern equivalents, refactoring deeply tangled modules where incremental fixes keep failing, converting a codebase between paradigms, or when simpler refactoring approaches have stalled and a full-cycle transformation is needed.

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Construct well-structured arguments using the hypothesis-argument-example triad. Covers formulating falsifiable hypotheses, building logical arguments (deductive, inductive, analogical, evidential), providing concrete examples, and steelmanning counterarguments. Use when writing or reviewing PR descriptions that propose technical changes, justifying design decisions in ADRs, constructing substantive code review feedback, or building a research argument or technical proposal.

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Analyze pre-trained generative diffusion models (Stable Diffusion, DALL-E, Flux) by computing quality metrics (FID, IS, CLIP score, precision/recall), inspecting noise schedules, extracting and visualizing attention maps, and probing latent spaces. Use when evaluating a pre-trained generative diffusion model's output quality, comparing noise schedule variants, analyzing cross-attention patterns for text-conditioned generation, interpolating between latent codes, or detecting out-of-distribution inputs.

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Analyze an arbitrary codebase to auto-detect workflows, data pipelines, and file dependencies using putior's put_auto() engine. Produces an annotation plan that maps detected I/O patterns to source files across 30+ supported languages with 902 auto-detection patterns. Use when onboarding onto an unfamiliar codebase to understand data flow, starting putior integration in a project without existing annotations, auditing a project's data pipeline before documentation, or preparing an annotation plan before running annotate-source-files.

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Analyze an arbitrary codebase to identify functions, APIs, and data sources suitable for exposure as MCP tools, producing a tool specification document. Use when planning an MCP server for an existing project, auditing a codebase before wrapping it as an AI-accessible tool surface, comparing what a codebase can do versus what is already exposed via MCP, or generating a tool spec to hand off to scaffold-mcp-server.

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Compute and analyze gematria (Hebrew numerical values) using standard, ordinal, and reduced methods. Covers word-to-number conversion, isopsephy comparisons, and interpretive frameworks. Use when computing the numerical value of a Hebrew word or phrase, comparing two words for shared gematria values, studying a biblical verse or divine name for numerical correspondences, or connecting a numerical result to its position on the Tree of Life.

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Read-only audit of a GitHub repository's security posture. Gathers ref protection (rulesets AND classic branch protection), Actions token permissions, code and supply-chain features (Dependabot, secret scanning, push protection, CodeQL), and repo hygiene toggles via `gh api`, then classifies findings against essential / recommended / advanced tiers into a PASS/GAP report. Makes NO changes. Use when reviewing a repo before open-sourcing or a release, auditing a public user-owned repo whose CI auto-commits to the default branch, verifying a hardening change actually took effect, or producing a baseline security posture report for a repository.

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Build and deploy a pkgdown documentation site for an R package to GitHub Pages. Covers _pkgdown.yml configuration, theming, article organization, reference index customization, and deployment methods. Use when creating a documentation site for a new or existing package, customizing layout or navigation, fixing 404 errors on a deployed site, or migrating between branch-based and GitHub Actions deployment methods.

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AI micro-reset between actions — the lightest self-care unit. A single conscious pause to check alignment before the next step. Where meditate is a full clearing session, breathe is one deliberate moment of awareness between tool calls or reasoning steps. Use mid-task when drift might be accumulating, between reading a file and acting on it, when about to make a decision that affects subsequent work, or as a habit between any two distinct actions.

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Consistent agent behavior after restart — progressive identity loading, working context reconstruction from persistent artifacts, fresh-vs-continuation detection, calibration through centering and attunement, and identity verification for coherence. Addresses the cold-start problem where an agent must reconstruct who it is and what it was doing from evidence rather than memory. Use at the start of every new session, after a session interruption or crash, when agent behavior feels inconsistent with prior sessions, or when persistent memory and current context appear contradictory.

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Detect missing glyphs, icons, and HD variants by comparing registries against glyph mapping files, icon directories, and manifests. Reports gaps for skills, agents, and teams across all palettes.

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Build a competitive or casual trading card game deck. Covers archetype selection, mana/energy curve analysis, win condition identification, meta-game positioning, and sideboard construction for Pokemon TCG, Magic: The Gathering, Flesh and Blood, and other TCGs. Use when building a new deck for a tournament format or casual play, adapting an existing deck to a changed meta-game, evaluating whether a new set warrants a deck change, or converting a deck concept into a tournament-ready list.

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Build reusable Shiny modules with proper namespace isolation using NS(). Covers module UI/server pairs, reactive return values, inter-module communication, and nested module composition. Use when extracting a reusable component from a growing Shiny app, building a UI widget used in multiple places, encapsulating complex reactive logic behind a clean interface, or composing larger applications from smaller, testable units.

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Build sequential (stateful) logic circuits including latches, flip-flops, registers, counters, and finite state machines. Covers SR latch, D and JK flip-flops, binary/BCD/ring counters, and Mealy/Moore FSM design with clock signal and timing analysis. Use when a circuit must remember past inputs, count events, or implement a state-dependent control sequence.

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Create parameterized Quarto or R Markdown reports that can be rendered with different inputs to generate multiple variations. Covers parameter definitions, programmatic rendering, and batch generation. Use when generating the same report for different departments, regions, or time periods; creating client-specific reports from a single template; building dashboards that filter to specific subsets; or automating recurring reports with varying inputs.

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Create production-ready Grafana dashboards with reusable panels, template variables, annotations, and provisioning for version-controlled dashboard deployment. Use when creating visual representations of Prometheus, Loki, or other data source metrics, building operational dashboards for SRE teams, migrating from manual dashboard creation to version-controlled provisioning, or establishing executive-level SLO compliance reporting.

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Build a feature store using Feast for centralized feature management, configure offline and online stores for batch and real-time serving, define feature views with transformations, and implement point-in-time correct joins for ML pipelines. Use when managing features for multiple ML models, ensuring training-serving consistency, serving low-latency features for real-time inference, reusing feature definitions across projects, or building a feature catalog for discovery and governance.

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Build a custom MCP (Model Context Protocol) server that exposes domain-specific tools to AI assistants. Covers server implementation in Node.js or R, tool definitions, the resources and prompts primitives, transport configuration, and testing with Claude Code. Use when you need to expose custom functionality beyond what mcptools provides, when building specialized domain-specific AI integrations, or when wrapping existing APIs or services as MCP tools.

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Achieve distributed agreement without central authority using bee democracy, threshold voting, and quorum sensing. Covers proposal generation, advocacy dynamics, commitment thresholds, deadlock resolution, and consensus quality assessment. Use when a group must decide between options without a designated leader, when centralized decision-making is a bottleneck, when stakeholders have different perspectives to integrate, or when designing automated systems that must reach consensus such as distributed databases or multi-agent AI.

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