29 skills (repositories by bioepic-data) · sorted by popularity
Extract one EcoSIM PFT parameter record from a PFT-parameter NetCDF file into a standalone NetCDF. Use when Codex needs to isolate all parameters for a given EcoSIM six-character PFT code such as ndlf34, or a four-character pfts_short value plus Koppen climate code, while preserving all non-PFT-specific variables such as pfts_short, pfts_long, and Koppen metadata.
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Extract EPA/NADP tDEP atmospheric deposition and NADP precipitation chemistry rasters for an AmeriFlux or EcoSIM site. Use when deriving atmospheric chemistry inputs such as NH4, NO3, SO4, Ca, or precipitation pH for EcoSIM forcing workflows.
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Use this skill when deriving EcoSIM plant trait parameter recommendations for a named plant from web and online literature evidence, using a read-only `plant_trait.*.desc` file and the `ndlf43` tree block or `gr3s43` grass block as the starting archetype. Never edit or replace the `.desc` file.
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Extract AmeriFlux BASE-BADM/BIF crop management records into EcoSIM-editable plant-management and soil-management Excel workbooks that can be converted to EcoSIM NetCDF files. Use when asked to derive EcoSIM planting, harvest, fertilizer, or tillage management inputs from AMF *_BIF_*.xlsx or BIF CSV files, especially for crop sites where management details live in GRP_DM_* records and DM_COMMENT fields.
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Sort AmeriFlux BASE-BADM BIF variables from Excel or CSV files into observation, management-event, static metadata, and plotting-ready target time-series tables. Use when Codex is asked to sort AmeriFlux BIF variables into time series; organize BADM/BIF variables by date; pivot AMF *_BIF_*.xlsx files by GROUP_ID; output total LAI, leaf mass per area, above-ground biomass, canopy height, fruit yield, or total yield time series; write MATLAB readers for BIF time-series plotting; or prepare dated AmeriFlux site observations and management records for EcoSIM workflows.
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