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Add an LLM provider to DeepChat by choosing a suitable API connection method, updating authentication and model configuration, and making focused source changes with tests for the affected behavior.
Send prompts to Novita AI models such as DeepSeek and GLM from the command line. Retrieve answers as readable text or structured JSON, stream responses as they arrive, and check available models and API connectivity.
Guide multi-step coding tasks with deepseek-v4-pro or deepseek-v4-flash in thinking mode. Verify files and symbols, write plans with confirmed file paths and line numbers, and use a verifier agent before changes spanning three or more files.
Search open-access academic papers through DeepXiv, then move from brief summaries to section outlines and individual sections. Find trending papers and focus reading on the parts needed to answer a research question.
Run an AI vulnerability scan on uncommitted changes, changes against main, or an entire codebase. Filter candidate files, investigate potential security issues, and review findings with severity ratings, with options to revalidate and export results.
Delegate code review, development, and research from OpenCode to DeepSeek Harness. The skill checks service readiness, tracks each task, and returns reports or proposed code changes for the main agent to review.
Prepare and publish DeepChat releases through its project-specific workflow. Update versions and bilingual changelogs, run release checks, manage release branches and tags, and resume unfinished releases before publishing after release PR approval.
Build molecular property prediction workflows with DeepChem for solubility, toxicity, and related chemistry tasks. Prepare molecular representations, choose compatible models, handle missing labels, and evaluate predictions using data splits designed for the intended scientific question.
Set up repeatable security tests for LLM apps with Promptfoo and DeepTeam. Connect them to automated build pipelines, detect renewed vulnerabilities to malicious instructions or data leakage, and compare results across model or prompt changes.
Adapt existing PyTorch training scripts to run across multiple GPUs or machines with Accelerate. This skill covers device setup, distributed training configuration, and mixed precision, which uses lower-precision numbers to reduce memory use.
Retrieve prior decisions and working context from Nowledge Mem in DeepChat, and save useful lessons for future work. It also supports requested conversation exports and connection troubleshooting while keeping operations within the selected server and Space.
Clean up DeepChat's specification-driven development documents after implementation and validation. Review feature, issue, and architecture files, remove completed or obsolete material when evidence supports deletion, and preserve maintained specifications while checking references.
Save explicitly requested facts or approved summaries and recall them across DeepChat conversations through Memcode. The skill checks storage status and supports answers with citations, while keeping saving and recall under the user's control.
Operate desktop applications through DeepChat's built-in Computer Use tools. Inspect windows, click controls, enter text, use menus, and arrange windows, checking the visible result after each action.
Configures deep linking in Flutter using Android App Links (assetlinks.json) and iOS Universal Links (apple-app-site-association) integrated with GoRouter v17.x navigation. Use this skill when setting up HTTPS domain association, handling magic links or email verification links, routing marketing campaign URLs (Google Ads, Facebook Ads) into the app, implementing password reset or invite flows via deep links, fixing deep link verification failures, troubleshooting GoRouter deep link integration, or any time the words 'deep link', 'universal link', 'app link', 'assetlinks', 'AASA', 'magic link', or 'deeplinking' appear in the request. Avoids deprecated custom URL schemes (myapp://).
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Call Gemini and OpenMaaS models such as Llama, DeepSeek, and Qwen through Google Cloud Agent Platform. Prepare authentication and SDK code, run prompts, configure connection endpoints, and troubleshoot common request errors.
Work with Feishu/Lark documents and spreadsheets through DeepChat's plugin tools. Search, summarize, create, or update content, and inspect or edit structured data using the operations available in the active plugin configuration.
Set up and run research that compares evidence across multiple sources, such as market studies, competitor analysis, or fact checks. The skill handles environment checks, installation guidance, research settings, progress reporting, final files, and recovery.
Run deep research through DeepAPI and save a report with sources. Use when asked for deep research, DeepAPI research, or Perplexity deep research.
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Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data. Uses BPNet (Avsec 2021 Nat Genet 53:354; soft motif syntax from ChIP-nexus), chromBPNet (Pampari A et al 2024 bioRxiv; bias-factorized base-resolution profiles), EnFormer (Avsec 2021 Nat Methods 18:1196; 196 kb input, ~100 kb effective receptive field), DeepSEA (Zhou 2015; multi-task CNN), and JASPAR 2026 deep-learning collection (1259 BPNet ChIP models). Performs in silico mutagenesis for variant-effect prediction, DeepLIFT/Grad attribution, and TF-MoDISco motif discovery from attribution scores. Use when predicting variant effects on TF binding, discovering soft motif syntax / cooperativity, integrating ChIP-seq with sequence-only predictions, or applying precomputed JASPAR Deep Learning models to new variants.
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Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data. Uses BPNet (Avsec 2021 Nat Genet 53:354; soft motif syntax from ChIP-nexus), chromBPNet (Pampari A et al 2025 Nat Genet; bias-factorized base-resolution profiles), EnFormer (Avsec 2021 Nat Methods 18:1196; 196 kb input, ~100 kb effective receptive field), DeepSEA (Zhou 2015; multi-task CNN), and JASPAR 2026 deep-learning collection (1259 BPNet ChIP models). Performs in silico mutagenesis for variant-effect prediction, DeepLIFT/Grad attribution, and TF-MoDISco motif discovery from attribution scores. Use when predicting variant effects on TF binding, discovering soft motif syntax / cooperativity, integrating ChIP-seq with sequence-only predictions, or applying precomputed JASPAR Deep Learning models to new variants.
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Deep, iterative, multi-source research that explores a topic from multiple perspectives, detects contradictions, and produces a comprehensive vault note with fact-level citations and a confidence map. Use this skill whenever the user says /deep-research, "deep research X", "research X thoroughly", "investigate X deeply", "I need to really understand X", or wants research that goes beyond a quick web search. Also use when the user wants to understand a complex, contested, or multi-faceted topic, compare competing approaches with evidence, or build a comprehensive mental model they can trust for decisions. This is heavier than /research — it searches web, academic papers, Reddit, and the vault, then loops through exploration and critique rounds until the evidence base is solid. When in doubt between /research and /deep-research, prefer this one if the topic is complex, contested, or the user wants depth over speed.
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Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data. Uses BPNet (Avsec 2021 Nat Genet 53:354; soft motif syntax from ChIP-nexus), chromBPNet (Pampari A et al 2024 bioRxiv; bias-factorized base-resolution profiles), EnFormer (Avsec 2021 Nat Methods 18:1196; 196 kb input, ~100 kb effective receptive field), DeepSEA (Zhou 2015; multi-task CNN), and JASPAR 2026 deep-learning collection (1259 BPNet ChIP models). Performs in silico mutagenesis for variant-effect prediction, DeepLIFT/Grad attribution, and TF-MoDISco motif discovery from attribution scores. Use when predicting variant effects on TF binding, discovering soft motif syntax / cooperativity, integrating ChIP-seq with sequence-only predictions, or applying precomputed JASPAR Deep Learning models to new variants.
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Multi-angle deep-research workflow over Ahmad's OpenMark knowledge graph (13k+ bookmarks). Use whenever Ahmad asks anything that requires more than one search to answer well — "what's the landscape of X in my saves", "do a deep dive on Y", "research X across my bookmarks", "compare what I saved about X vs Y", "give me everything on X". Also use when fast-search returned thin results and Ahmad pushed back ("dig deeper", "more results", "actually research it"). Pairs Neo4j graph search with WebFetch on top picks to bring back fresh page content. Triggers on "deep research", "dig deeper", "research", "landscape", "everything on", "thorough", "comprehensive".
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