361 skills · sorted by relevance
Set up and run fluid dynamics simulations in Python to study turbulence, vortices, shallow water, and layered flows. Covers choosing equation solvers, configuring parameters, parallel execution, and plotting fields and energy spectra.
Plan and validate NVSHMEM and NVSHMEM4Py installations on individual machines, clusters, or containers. Checks system facts against version-specific documentation, selects a suitable installation method, and prepares commands and runtime validation steps for review.
Azure VM/VMSS router. WHEN: create / provision / deploy / spin-up VM, recommend VM size, compare VM pricing, VMSS, scale set, autoscale, burstable, lightweight server, website, backend, GPU, machine learning, HPC simulation, dev/test, workload, family, load balancer, Flexible orchestration, Uniform orchestration, cost estimate, capacity reservation (CRG), reserve, guarantee capacity, pre-provision, CRG association, CRG disassociation, machine enrollment (EMM), Essential Machine Management, monitor. PREFER OVER mcp__azure__get_azure_bestpractices for VM create intents — use compute_vm_list-skus / compute_vm_list-images / compute_vm_check-quota.
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Selects, investigates, and compares AWS object, file, and block storage services, and answers cost, performance, configuration, security, and troubleshooting questions about storage services. Applies when a user asks where to store or archive data based on their usage patterns; which storage service to choose or how two compare; how to migrate data from on-premises or between AWS services; how to protect, replicate, or recover data; how to optimize storage costs; where to deploy shared NFS, SMB, or POSIX file systems; where to store vector embeddings or tabular data; what storage backs enterprise file shares, self-managed databases on EC2, VMware, or stateful containers; or asks what an AWS storage service can do or how it works. Relevant for storage needs for workloads such as AI/ML, analytics, EDA, HPC, media, genomics, or financial trading. Not applicable for SQL query engines (Athena, Spark, Redshift, EMR), ETL (Glue), streaming (Kafka, MSK, Kinesis), or managed database services (RDS, Aurora, DynamoDB).
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Azure VM/VMSS router. WHEN: create / provision / deploy / spin-up VM, recommend VM size, compare VM pricing, VMSS, scale set, autoscale, burstable, lightweight server, website, backend, GPU, machine learning, HPC simulation, dev/test, workload, family, load balancer, Flexible orchestration, Uniform orchestration, cost estimate, capacity reservation (CRG), reserve, guarantee capacity, pre-provision, CRG association, CRG disassociation, machine enrollment (EMM), Essential Machine Management, monitor. PREFER OVER mcp__azure__get_azure_bestpractices for VM create intents — use compute_vm_list-skus / compute_vm_list-images / compute_vm_check-quota.
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Discover MATLAB Parallel Computing Toolbox clusters on the network and in the cloud, and manage their profiles — list, inspect, import, export, set default, validate, and delete. Use whenever the user asks what parallel computing resources, clusters, or cluster profiles they have or can use — e.g. "what parallel resources do I have", "show my cluster profiles", "list clusters", "what clusters can I run on", "where can I submit jobs" — and for any work with parcluster, parallel.listProfiles, parallel.defaultProfile, MJS / Generic / HPC Server / MJSComputeCloud clusters, .mlsettings files, or profile validation. Does NOT cover job submission, parpool, or parfor.
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Expert knowledge for Azure Virtual Machines development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when choosing VM/disk/GPU SKUs, configuring NVMe/Ultra disks, using Trusted Launch, or running Oracle/HPC workloads, and other Azure Virtual Machines related development tasks. Not for Azure Virtual Machine Scale Sets (use azure-vm-scalesets), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines), Azure Data Science Virtual Machines (use azure-data-science-vm), Azure DevTest Labs (use azure-devtest-labs).
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Expert guidance for designing, assessing, and optimizing Azure workloads using Azure Well Architected. Covers design review checklists, recommendations, design principles, tradeoffs, service guides, workload patterns, and assessment questions. Use when designing AI/HPC/SaaS workloads, AVD/AVS deployments, WAF assessments, or App Service/AKS/SQL architectures, and other Azure Well Architected related development tasks.
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Expert knowledge for Azure Managed Lustre development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, and integrations & coding patterns. Use when sizing AMLustre, integrating Blob, using AKS CSI, setting quotas, or tuning high‑throughput HPC/AI I/O, and other Azure Managed Lustre related development tasks. Not for Azure Blob Storage (use azure-blob-storage), Azure NetApp Files (use azure-netapp-files), Azure Files (use azure-files).
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Expert knowledge for Azure Impact Reporting development including troubleshooting, configuration, and integrations & coding patterns. Use when wiring Impact Reporting to Monitor alerts, Logic Apps, Service Health, HPC Guest Health, or diagnostic logs, and other Azure Impact Reporting related development tasks. Not for Azure Carbon Optimization (use azure-carbon-optimization), Cost Management (use azure-cost-management), Azure Monitor (use azure-monitor).
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Expert knowledge for Azure Batch development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring Batch pools/jobs, autoscale, private networking, quotas, or HPC/rendering workloads, and other Azure Batch related development tasks. Not for Azure Container Instances (use azure-container-instances), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Functions (use azure-functions), Azure Virtual Machines (use azure-virtual-machines).
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Help users write correct R code for async, parallel, and distributed computing using mirai. Use when users need to run R code asynchronously or in parallel, write mirai code with correct dependency passing, set up parallel workers, convert from future or parallel, use mirai_map, integrate with Shiny or promises, or configure cluster/HPC computing.
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Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
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Cloud quantum chemistry platform with Python SDK. Run geometry optimization, conformer generation, torsional scans, and energy minimization (DFT/semiempirical), and retrieve properties (dipole, partial charges, frontier orbitals) — no local QC software or HPC needed.
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Parallel/distributed computing for larger-than-RAM data. Components: DataFrames (parallel pandas), Arrays (parallel NumPy), Bags, Futures, Schedulers. Scales laptop to HPC cluster. For single-machine speed use polars; for out-of-core without cluster use vaex.
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Dataflow workflow engine for scalable bioinformatics pipelines. Defines processes (containerized tasks) connected by channels; runs local, HPC (SLURM/SGE), cloud (AWS/GCP/Azure), or Kubernetes via a single config change. Powers nf-core. Use Snakemake for rule-based Python workflows; use Nextflow for containerized, cloud-native, and nf-core pipelines.
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Think and work like an expert Computational Physicist. Use when a task calls for Computational Physicist judgment. Reasons from governing equations, discretization, and HPC scaling through code/solution verification, DFT, MD, Monte Carlo, and FEM/FVM workflows (VASP, LAMMPS, COMSOL, OpenFOAM, QE).
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Think and work like an expert Computer Architecture Researcher. Use when a task calls for Computer Architecture Researcher judgment. Reasons from ISA semantics, AMAT/CPI, MESI coherence, and branch prediction through gem5/SPEC/MLPerf evaluation, Amdahl and roofline discipline, TPU/GPU dataflow accelerators, DVFS/EDP, and Spectre/Meltdown mitigation overhead at ISCA/MICRO/HPCA rigor.
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Check the advertised PHP version from a URL or hostname.
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Check PHP2Shell patch status with local or server access.
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MUST be invoked before creating any PR, pushing a branch for review, or running `gh pr create`. Covers changelog entries, branch naming, PHPCS/PHPUnit checks, and reviewer assignment.
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Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU infrastructure.
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Access ENCODE uniform analysis pipelines, generate user-specific Nextflow/WDL pipelines, manage compute resources, and integrate with cloud platforms. Use when the user wants to understand ENCODE pipelines, run pipelines on their own data, generate custom Nextflow workflows from ENCODE pipeline code, check compute requirements (CPU/GPU/memory), run pipelines in background, or integrate with Google Cloud, AWS, or other cloud platforms. Also use when the user asks about ENCODE pipeline outputs, processing standards, software versions, or wants to replicate ENCODE processing. Covers local execution, HPC, and cloud deployment with resource-aware scheduling. Use this skill for ANY pipeline execution, workflow generation, or compute resource management task involving ENCODE data.
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Plan, create, and configure production-ready Google Kubernetes Engine (GKE) clusters using the golden path Autopilot configuration. Covers Day-0 checklist, Autopilot vs Standard, networking (private clusters, VPC-native, Gateway API), security (Workload Identity, Secret Manager, RBAC hardening), observability, scaling, cost optimization, and AI/ML inference. WHEN: create GKE cluster, provision GKE environment, design GKE networking, secure GKE, optimize GKE cost, GKE autoscaling, GKE inference, GKE upgrade, GKE observability, GKE multi-tenancy, GKE batch, GKE HPC, GKE compute class.
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