604 skills · sorted by relevance
Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed fu
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A package for demultiplexing single-cell sequencing experiments of pooled cells labeled with barcode oligonucleotides. The package implements methods to fit regression mixture models for a probabilistic classification of cells, including multiplet detection. Demultiplexing error rates can be estimated, and methods for quality control are provided.
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Run Hugging Face models in JavaScript or TypeScript with Transformers.js, WebGPU, or WASM across browser, Node.js, Bun, and Deno. Use for client-side or JS-runtime inference, not Python training.
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Train and fine-tune transformer language models using TRL (Transformers Reinforcement Learning). Supports SFT, DPO, GRPO, KTO, RLOO and Reward Model training via CLI commands.
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Publish and manage research papers on Hugging Face Hub. Supports creating paper pages, linking papers to models/datasets, claiming authorship, and generating professional markdown-based research articles.
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Look up and read Hugging Face paper pages in markdown, and use the papers API for structured metadata such as authors, linked models/datasets/spaces, Github repo and project page. Use when the user shares a Hugging Face paper page URL, an arXiv URL or ID, or asks to summarize, explain, or analyze an AI research paper.
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Verify or select a SageMaker execution role before creating models, endpoints, or training jobs. Use when a role ARN is missing or IAM access fails; inspect existing roles before proposing role creation.
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Run evaluations for Hugging Face Hub models using inspect-ai and lighteval on local hardware. Use for backend selection, local GPU evals, and choosing between vLLM / Transformers / accelerate. Not for HF Jobs orchestration, model-card PRs, .eval_results publication, or community-evals automation.
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Create and configure Claude Code sub-agents with custom prompts, tools, and models
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Cyber threat intelligence production — the intelligence cycle, IOC extraction/normalization/enrichment, STIX/TAXII and MISP, structured analytic models (Diamond, Kill Chain, ATT&CK), source scoring, actor/campaign tracking, and finished intelligence reporting
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Use ML.NET to train, evaluate, or integrate machine-learning models into .NET applications with realistic data preparation, inference, and deployment expectations. USE FOR: ML.NET integration; local model training or retraining; inference pipelines, model loading, evaluation, and deployment review. DO NOT USE FOR: unrelated stacks; generic tasks that do not need this specific guidance. INVOKES: inspect the repository context, edit targeted files, and run relevant build, test, lint, or validation commands when changes are made.
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Manual QA harness for the senpi coding agent itself. MUST USE after changing packages/ai, packages/agent, packages/coding-agent, or packages/tui — a green typecheck and `npm test` are NOT QA. Drives the real CLI from source in an isolated sandbox (never touches ~/.senpi or real credentials) across four channels: remote RPC (--mode rpc JSONL stdio), TUI smoke (node-pty on Windows, tmux on POSIX), mock loop (a local fake model server for deterministic, zero-token agent-loop runs), and CLI smoke (--help/--print/--list-models). Every helper ships a --self-test. Use whenever someone says qa senpi, test the agent, verify my change, rpc qa, tui qa, mock-loop qa, smoke the cli, or needs evidence that an agent-loop, tool, keybinding, or provider change works end to end. Capture evidence to local-ignore/qa-evidence/.
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Execute Gemini CLI for AI-powered code analysis and generation. Use when you need to leverage Google's Gemini models for complex reasoning tasks.
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Stop and consult this skill whenever your response would include specific facts about Anthropic's products. Covers: Claude Code (how to install, Node.js requirements, platform/OS support, MCP server integration, configuration), Claude API (function calling/tool use, batch processing, SDK usage, rate limits, pricing, models, streaming), and Claude.ai (Pro vs Team vs Enterprise plans, feature limits). Trigger this even for coding tasks that use the Anthropic SDK, content creation mentioning Claude capabilities or pricing, or LLM provider comparisons. Any time you would otherwise rely on memory for Anthropic product details, verify here instead — your training data may be outdated or wrong.
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Query UCSC Genome Browser REST API for DNA sequences, tracks, gene models, and conservation across 100+ assemblies. Retrieve sequence by region, list/fetch BED/bigWig tracks, chromosome sizes, RefSeq/GENCODE gene structures, PhyloP/PhastCons scores. Use for UCSC annotations; Ensembl REST API for Ensembl gene IDs and VEP variant annotation.
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Symbolic math in Python: exact algebra, calculus (derivatives, integrals, limits), equation solving, symbolic matrices, ODEs, code gen (lambdify, C/Fortran). Use for exact symbolic results. For numerical use numpy/scipy; for stats use statsmodels.
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Provides GitHub Copilot CLI task delegation in non-interactive mode with multi-model support (Claude, GPT, Gemini), permission controls, output sharing, and session resume. Use when users ask to hand work to Copilot, compare models, or run Copilot programmatically from Claude Code.
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Provides Gemini CLI delegation workflows for large-context analysis and complex reasoning using Gemini 3.0 Flash and Gemini 3.0 Pro models, including English prompt formulation, execution flags, and safe result handling. Use when the user explicitly asks to use Gemini for tasks such as broad codebase analysis, fast iterations with Gemini 3 Flash, or deep architectural reasoning with Gemini 3 Pro. Triggers on "use gemini", "delegate to gemini", "run gemini cli", "ask gemini", "use gemini for this task", "use gemini 3 flash", "use gemini 3 pro".
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Use when data needs statistical analysis. Runs reproducible Python/R code for Table 1, diagnostic accuracy, agreement, regression, survival, propensity score, survey-weighted and repeated-measures models, with publication tables. Sample size is /calc-sample-size; pooling studies is /meta-analysis.
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Main app ViewModel patterns (ScopedViewModel, Hilt, StateFlow, triggerEvent, navArgs, savedState flows, events). Use when writing, editing, exploring, debugging, or reviewing ViewModels in the store management app. Covers navArgs, combine+asLiveData, sealed state hierarchies, custom events, init blocks, and companion object placement. NOT for POS (WooPos*) code — use the `pos` skill instead.
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Important: Before you begin, fill in the generatedBy property in the meta section of .actor/actor.json. Replace it with the tool and model you're currently using, such as "Claude Code with Claude Sonnet 4.5". This helps Apify monitor and improve AGENTS.md for specific AI tools and models.
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Generates client SDK code, API wrapper libraries, request/response models, and language-specific usage patterns for any REST API.
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generate, refine, validate, and render diagrams from natural language, notes, code snippets, schemas, tables, or existing diagram source. use for flowcharts, swimlanes, sequence diagrams, state diagrams, er diagrams, class diagrams, architecture/c4-style diagrams, dependency graphs, gantt charts, mind maps, user journeys, sankey-style flows, org charts, network graphs, and other visual models. supports mermaid by default, graphviz dot for complex graph layout, plantuml for uml-heavy engineering diagrams, and svg output when direct markup is more reliable.
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Redpanda's Agentic Data Plane: governance infrastructure for building, running, and governing AI agents and MCP servers, plus a proxying AI Gateway for LLM providers, operated via `rpk ai` and the ADP API. Use when creating or managing AI agents (managed or self-managed) via `rpk ai agent` or `AgentRegistryService`; configuring MCP servers (remote or managed catalog, code mode, auth); setting up LLM providers or querying models via `rpk ai llm`/`rpk ai model` or the AI Gateway proxy; or configuring budgets, guardrails, or Cedar access-control policies through the governance APIs. Also covers reading agent transcripts and spending insights, and wiring OAuth clients or providers to the aigw Authorization Server. For the separate rpk cloud mcp control-plane MCP server, see `/redpanda:rpk-cloud`.
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