Results for “datasets”

Refresh HitKeep's checked-in bot/AI-agent, IP metadata, and spam-filter datasets through their canonical generators. Use for routine generated-data maintenance; do not use for hand-editing generated assets or changing detector policy.

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Use whenever the user mentions Zenodo, depositing or publishing research artifacts (datasets, software, papers, posters) to Zenodo, minting a DOI for a dataset/code release, uploading files to a Zenodo record, creating a new version of a Zenodo deposit, or searching Zenodo records. Covers the full Zenodo REST API workflow — create deposition, upload files via the bucket API, set metadata, publish, version, and search — for both production (zenodo.org) and sandbox (sandbox.zenodo.org).

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Use whenever the user wants to interact with Figshare - searching public datasets/articles, downloading Figshare files, listing their own articles/collections/projects, creating or updating articles, or uploading files (including large multi-part uploads) via the Figshare v2 REST API. Trigger on mentions of "figshare", figshare DOIs (10.6084/m9.figshare.*), figshare.com URLs, or phrases like "upload my dataset to figshare", "publish to figshare", "get figshare article".

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Design eval harnesses — task schemas, metrics, dataset versioning, eval-as-code patterns. Use when asked to "build an eval harness", "set up eval-as-code", or "version our eval datasets".

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Data cleaning, transformation, reshaping, joins, missing data handling, and tidy data principles. Covers the full pipeline from raw ingestion to analysis-ready datasets -- type coercion, deduplication, outlier detection, normalization, melting/pivoting, regex extraction, and reproducible transformation chains. Use when preparing, cleaning, or transforming data for analysis.

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Bias detection and mitigation, fairness metrics, privacy frameworks, consent models, transparency requirements, and accountability structures for data science practice. Covers algorithmic bias sources, disparate impact testing, differential privacy, GDPR principles, model cards, datasheets for datasets, responsible AI frameworks, and the organizational governance needed to make ethics actionable. Use when auditing models for bias, designing privacy-preserving systems, establishing governance processes, or evaluating the social impact of data-driven decisions.

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Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

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This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.

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Use when the user wants a last30days-style pre-research pass in Deepline: discover the critical public, private, CRM, workflow, social, and web data sources for a research/enrichment job; compare provider coverage; estimate Deepline credit cost; recommend the source plan before building or running the workflow; or build custom language/messaging from buyer, competitor, community, and CRM evidence. Triggers: pre-research, source discovery, provider strategy, research data sources, ScrapeCreators, X/Twitter data, Reddit comments, public and private datasets, CRM data, workflow data, custom language, messaging language, pain language.

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Deprecated alias. This skill was renamed to `deepline-research`. Use when a user or script still invokes `/deepline-pre-research`: immediately load and follow the `deepline-research` skill instead. Triggers: pre-research, source discovery, provider strategy, research data sources, ScrapeCreators, X/Twitter data, Reddit comments, public and private datasets, CRM data, workflow data, custom language, messaging language, pain language.

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Audit skill lifecycle by tracing call chains, detecting circular dependencies, finding instruction contradictions, identifying duplicated datasets, analyzing bidirectional coherence, discovering scriptable sequences, and learning patterns. Use when checking skill coherence, validating skill workflow, finding semantic gaps in plugin structure, or auditing plugin before marketplace submission. Generates audit reports to .plugin-creator/audits/ with findings by dimension.

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Run SQL against Google BigQuery and browse its catalog — submit queries (sync or async), poll job status, page through results, list datasets/tables, and read table schemas. Use this whenever the user wants to query a BigQuery table, ask "what's in this dataset", check a BigQuery job's status, or mentions bigquery.googleapis.com or a `project.dataset.table` path. Always start from this skill when interacting with this service — its bundled scripts and recipes are the fastest path.

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Use when verifying information (fact, number, quote, event, statement) against authoritative primary sources, or cross-checking a number via one-level metric decomposition (Z = P × Q). Triggers: "verify X", "is this true", "find the original source", "where is this number from", "two sources disagree", "is it true X never did Y". Covers five scenarios: (1) basic truthfulness check, (2) completeness / out-of-context quoting, (3) one-level reasoning verification, (4) negative-statement handling, (5) multi-source conflict side-by-side output. Dig into whitelisted primary sources only (user-supplied files, official websites & databases, authoritative industry sources); cited reports / charts / datasets must be downloaded and read locally to count as verified — if download is blocked, hand the link to the user. If nothing can be found, plainly state "cannot verify" rather than guessing, patching, or citing secondary paraphrases. Always reply in the user's question language.

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Roll out governed MotherDuck analytics to internal teams, choosing trusted datasets, access boundaries, and owners.

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Use Kiln to create eval datasets, rate outputs, optimize prompts and models, and ship the same AI task or agent definition from a local workbench into production code.

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Use MemoryBench to run repeatable conversational memory and RAG benchmarks across providers, datasets, judge models, checkpoints, and structured reports.

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Respan for LLM observability. Use to set up tracing or the gateway, manage prompts (create/version/deploy), run evals, experiments, and datasets, or work with traces and logs. Trigger for any Respan platform task or when instrumenting an app to send telemetry to Respan.

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Use Therapeutics Data Commons through the PyTDC Python package for registry discovery, approved dataset access, task-aware splits (scaffold, cold-start, temporal, combination), evaluator metrics, benchmark groups, and bounded molecular-oracle workflows. Use this skill to find which TDC datasets exist for a therapeutic task, load them with a split that does not leak, score predictions with the task's own official metric rather than a generic one, and run benchmark groups reproducibly. Also trigger on PyTDC, Therapeutics Data Commons, tdc.single_pred, tdc.multi_pred, ADMET Benchmark Group, scaffold split, get_split, or molecular oracles such as GSK3B, JNK3 and DRD2.

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Query the ChEMBL database web services for measured bioactivity data, compound records and calculated properties, targets, assays, mechanisms of action, drug indications and warnings. Use this skill to build curated SAR or QSAR datasets for a target, look compounds up by SMILES, InChIKey, name, or ChEMBL id, run similarity and substructure searches, and check what chemistry is already known against a protein. Also trigger when a query mentions ChEMBL ids (CHEMBL...), pChEMBL values, IC50/Ki/Kd/EC50 retrieval, assay confidence scores, or ebi.ac.uk/chembl.

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PHPUnit and Pest patterns for any PHP project: test structure, naming, data providers, test doubles (mocks/stubs/fakes), fixtures, and coverage targets. Stack-agnostic — referenced by every PHP plugin in the marketplace. Use this skill to: - Structure unit and integration tests with PHPUnit or Pest consistently. - Drive cases with data providers / datasets instead of copy-pasted test bodies. - Use test doubles with discipline — mock collaborators, not the system under test. - Set up and tear down fixtures cleanly and aim for a meaningful coverage target. Do NOT use this skill for: - PHP language idioms — see php-foundation:php-conventions. - Composer / autoloading — see php-foundation:composer-tooling. - Framework-specific test helpers (Laravel RefreshDatabase/actingAs, Symfony WebTestCase/KernelTestCase) — those are injected by the framework plugin's QA phase.

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Use near the end of EZ_math_model intake when external/user-corpus contains user-provided papers, notes, PDFs, datasets, or examples that should become a local AGENTS.md reference index.

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Select an OCR/HTR engine by benchmarking candidates on the same labelled samples — source ground truth from open datasets (e.g. Hugging Face PAGE-XML corpora) or hand-transcription, wrap every engine behind a transcribe(image_path) -> str adapter (vision-LLMs via any OpenAI-compatible endpoint, dedicated HTR REST APIs, cloud OCR), and score with zero-dependency raw CER, lenient CER, WER, and a critical name/date token diff. Use when choosing an engine for handwriting or historical-document transcription, when published accuracy claims need honest verification on your own material, or when a records workflow must surface confident-but-wrong names and dates that a low aggregate CER hides.

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Specific optimization strategies for Python scripts working with larger-than-memory datasets via Dask.

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Hugging Face Hub operations, model inference, dataset management, PEFT/LoRA fine-tuning, and Spaces deployment via MCP tools and Python APIs

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