Results for “modules”

Infer gene regulatory networks from bulk or general expression data with mutual-information (ARACNe) and tree-ensemble (GENIE3, GRNBoost2) methods, and infer transcription-factor protein activity from regulons with VIPER and msVIPER. Covers the activity-not-edges paradigm, the undirected-association caveat, the DREAM5 wisdom-of-crowds and method-complementarity result, AUPRC-over-AUROC evaluation, and gold-standard incompleteness. Use when inferring a regulatory network from a bulk expression matrix, finding master regulators, or scoring TF activity from a signature. For single-cell motif-pruned regulons see scenic-regulons; for co-expression modules see coexpression-networks.

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Audit required bioinformatics command-line tools against Lmod or Environment Modules on Linux HPC clusters, resolve executable and version requirements, and reproducibly deploy missing software through a site-approved EasyBuild, Spack, Bioconda/micromamba, Apptainer, binary, or source-build workflow. Use when Codex must inspect module availability, diagnose a missing or wrong-version bioinformatics tool, install scientific software on Slurm/PBS clusters, publish or validate modulefiles, or produce an auditable and rollback-ready cluster software deployment.

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Use when a carrier needs to build an internal dispatcher training program, onboard new dispatchers, or certify dispatcher competency. Covers job description, required skills, training modules, certification frameworks (CDS, CTP), shadowing, evaluation, and career path.

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Builds reusable Convex components with isolated tables and app-facing APIs. Use for new components, reusable backend modules, integrations, or component boundary work.

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Pull version-current Convex docs for the version this project uses — pin the installed version, fetch page-as-markdown or check node_modules types, freshness hierarchy — instead of writing a possibly-stale API from memory.

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Analyzes coupling and cohesion metrics in PHP codebases. Calculates Afferent/Efferent coupling (Ca/Ce), LCOM metrics, instability index, and abstractness. Identifies highly coupled modules and low cohesion classes.

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ABP Framework cross-cutting patterns including authorization, background jobs, distributed events, multi-tenancy, and module configuration. Use when: (1) defining permissions, (2) creating background jobs, (3) publishing/handling distributed events, (4) configuring modules.

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React Native and Expo best practices for building performant mobile apps. Use when building React Native components, optimizing list performance, implementing animations, or working with native modules. Triggers on tasks involving React Native, Expo, mobile performance, or native platform APIs.

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Import existing Azure resources into Terraform using Azure CLI discovery and Azure Verified Modules (AVM). Use when asked to reverse-engineer live Azure infrastructure, generate Infrastructure as Code from existing subscriptions/resource groups/resource IDs, map dependencies, derive exact import addresses from downloaded module source, prevent configuration drift, and produce AVM-based Terraform files ready for validation and planning across any Azure resource type.

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Install, configure, and manage 1-SEC — an open-source, all-in-one cybersecurity platform (16 modules, single binary) on Linux servers and VPS instances. Use when the user asks to secure a server, install security monitoring, set up intrusion detection, harden a VPS, protect an AI agent host, or deploy endpoint defense. Covers installation, setup, enforcement presets, module configuration, alert management, and ongoing security operations.

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Produce a higher-level architecture and context map for unfamiliar code. Use when you need to understand how a file, module, feature, or issue fits into the bigger picture, including relevant modules, callers, callees, dependencies, and next context.

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Surface architectural friction and propose deepening opportunities that improve testability and AI-navigability. Use when the user wants to improve architecture, find refactoring opportunities, consolidate tightly-coupled modules, or make a codebase easier for agents to navigate.

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Expert C4 Code-level documentation specialist. Analyzes code directories to create comprehensive C4 code-level documentation including function signatures, arguments, dependencies, and code structure. Use when documenting code at the lowest C4 level for individual directories and code modules.

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Write efficient C code with proper memory management, pointer arithmetic, and system calls. Handles embedded systems, kernel modules, and performance-critical code. Use PROACTIVELY for C optimization, memory issues, or system programming.

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Implement, organize, and test Rust modules in this repository following mandatory project organization and test discovery rules. Use when tasks involve Cargo crates, module structure, Rust refactors, or creation/fix of Rust tests including required error test coverage.

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Implement, organize, and test Rust modules following mandatory project organization and test discovery rules. Use when tasks involve Cargo crates, module structure, Rust refactors, or creation/fix of Rust tests including required error test coverage.

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Base implementation skill for this repository across .NET/C#, backend APIs, database/ORM, frontend Vue/Quasar, and Rust with Clean Architecture rules. Use when the user asks to build features, fix bugs, refactor modules, or improve code-level performance, and use specialized skills as inheritance layers when available.

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Detect Mimikatz execution through command-line patterns, LSASS access signatures, binary indicators, and in-memory detection of known modules.

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Hardware Security Modules (HSMs) are tamper-resistant physical devices that safeguard cryptographic keys and perform cryptographic operations in a hardened environment. Keys stored in an HSM never lea

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Analyzes RAM memory dumps from compromised systems using the Volatility framework to identify malicious processes, injected code, network connections, loaded modules, and extracted credentials. Supports Windows, Linux, and macOS memory forensics. Activates for requests involving memory forensics, RAM analysis, volatile data examination, process injection detection, or memory-resident malware investigation.

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Apply DESIGN, canon, and modules to every page in the inventory, producing a deployable static HTML site. Three render branches (approved page, template-applied sibling, unique render). Per-page, incremental, idempotent, content-preserving by default.

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Guides stable API and interface design. Use when designing APIs, module boundaries, or any public interface. Use when creating REST or GraphQL endpoints, defining type contracts between modules, or establishing boundaries between frontend and backend.

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Creates reusable Terraform modules with proper structure, variables, outputs, and state management for infrastructure as code. Use when users request "Terraform setup", "infrastructure as code", "IaC module", "cloud provisioning", or "Terraform module".

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Identifies domain modules, ownership boundaries, dependencies, and interfaces using Domain-Driven Design principles. Provides domain maps, bounded contexts, refactor recommendations. Use for "DDD", "domain modeling", "bounded contexts", or "service boundaries".

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