Results for “activity”

Infer gene regulatory networks from bulk or general expression data with mutual-information (ARACNe) and tree-ensemble (GENIE3, GRNBoost2) methods, and infer transcription-factor protein activity from regulons with VIPER and msVIPER. Covers the activity-not-edges paradigm, the undirected-association caveat, the DREAM5 wisdom-of-crowds and method-complementarity result, AUPRC-over-AUROC evaluation, and gold-standard incompleteness. Use when inferring a regulatory network from a bulk expression matrix, finding master regulators, or scoring TF activity from a signature. For single-cell motif-pruned regulons see scenic-regulons; for co-expression modules see coexpression-networks.

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Follow these patterns when implementing activity emission and audit logging in OptAIC. Use for emitting ActivityEnvelopes on mutations (create, update, delete, execute), designing payloads, and ensuring audit compliance.

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Design activity programs for senior engagement. TRIGGERS - Use when user needs help with activity-program-senior related tasks.

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Implement activity-based costing systems. TRIGGERS - Use when user needs help with activity-based-costing related tasks.

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Infer gene regulatory networks from bulk or general expression data with mutual-information (ARACNe) and tree-ensemble (GENIE3, GRNBoost2) methods, and infer transcription-factor protein activity from regulons with VIPER and msVIPER. Covers the activity-not-edges paradigm, the undirected-association caveat, the DREAM5 wisdom-of-crowds and method-complementarity result, AUPRC-over-AUROC evaluation, and gold-standard incompleteness. Use when inferring a regulatory network from a bulk expression matrix, finding master regulators, or scoring TF activity from a signature. For single-cell motif-pruned regulons see scenic-regulons; for co-expression modules see coexpression-networks.

The English summary is being prepared. Showing the original description.

Infer gene regulatory networks from bulk or general expression data with mutual-information (ARACNe) and tree-ensemble (GENIE3, GRNBoost2) methods, and infer transcription-factor protein activity from regulons with VIPER and msVIPER. Covers the activity-not-edges paradigm, the undirected-association caveat, the DREAM5 wisdom-of-crowds and method-complementarity result, AUPRC-over-AUROC evaluation, and gold-standard incompleteness. Use when inferring a regulatory network from a bulk expression matrix, finding master regulators, or scoring TF activity from a signature. For single-cell motif-pruned regulons see scenic-regulons; for co-expression modules see coexpression-networks.

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Use this skill for internal Vue reactivity and state-model work in the nuxt-ui-tools repository. Covers lean reactivity, query-state integration, when to use computed vs watch vs shallowRef, VueUse usage, and how to simplify over-layered state models.

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Prepare an agent activity transcript for a GitHub pull request or issue. Extract relevant prompts, decisions, and results from local logs, remove sensitive material, and preview the edited record before separately authorized publication.

• Preparing an agent activity record for a pull request
• Extracting task-relevant prompts and results from local logs
• Previewing a transcript with sensitive information removed

Search screen text and audio recorded by Screenpipe to recall meetings or activity in other apps. Filter by topic, time, or application, then optionally save selected facts with source references into claude-mem.

• Recalling something seen in another app
• Finding a recorded meeting discussion
• Saving selected findings into claude-mem

Investigate a GitHub project through repository data and web sources, then produce a Markdown report covering its development history, technical structure, activity metrics, and alternatives, with citations and diagrams where useful.

• Investigating an open source project's technical structure
• Reconstructing development milestones from commits and releases
• Comparing a project with competing alternatives

Manage Capsule CRM, a customer relationship management service, through natural language requests. Create and update contacts and organizations, filter records by multiple conditions, and review tasks, projects, and activity history through the Composio MCP integration.

• Finding contacts by region and tag
• Creating or updating contacts and organizations
• Reviewing open tasks and projects

Run and manage an agent in Anthropic's cloud for long or asynchronous tasks. Create a session with packages and tools, send work, inspect status and activity, continue with saved files and conversation, then terminate the session.

• Assigning long-running work to a cloud agent
• Continuing work with saved files and conversation
• Inspecting session status and tool activity

Review a ChatGPT Space page and its existing schedules, then set up recurring work such as refreshing figures, summarizing activity, or maintaining tasks. Adjust timing and instructions, preserve useful schedules, and remove or disable work that is no longer needed.

• Schedule daily updates to page figures
• Set up weekly activity summaries
• Maintain a task list on a recurring schedule

Connect Withings and retrieve body measurements, activity, sleep, and workout records. Select dates and measurements to review daily or weekly trends, or inspect individual sleep and workout sessions using the bundled command-line tool.

• Review daily weight trends
• Check weekly step totals
• Review sleep duration and scores

Read balances, transactions, recurring payments, loan details, and investment holdings from financial accounts linked through Plaid. Review multiple institutions together or focus on selected accounts and dates to understand recorded spending and financial activity.

• Checking balances across linked accounts
• Reviewing spending over a chosen period
• Listing active subscriptions and recurring bills

Structure Remotion code so elements remain editable in Studio. Follow markup patterns that support selection, dragging, resizing, rotation, style changes, and animation keyframes, including editable SVG shapes and their transitions.

• Making titles and images editable in Studio
• Keeping animation keyframes editable
• Editing SVG shapes and their transitions visually

Automate Safari on macOS from the command line while retaining browser logins. Read pages, fill forms, save PDFs, inspect network activity, and return structured JSON results through the tools exposed by safari-mcp.

• Read pages using Safari's existing login state
• Fill multiple form fields in one operation
• Save web pages as PDFs or screenshots

Operate NVIDIA Nsight Graphics from the command line to capture application frames and GPU activity. Summarize performance traces, analyze existing capture files through ngfx-replay, and check installed versions and compatibility before starting an investigation.

• Check installed Nsight Graphics versions and compatibility
• Capture frames from a graphics application
• Summarize GPU activity and investigate performance bottlenecks

Turn small-molecule structures into numerical features for similarity searches and models that predict activity or properties. Using Molfeat, the skill covers representation choices, invalid inputs, alignment with experimental labels, and saving feature-generation settings for reuse.

• Prepare molecular features for activity or property prediction
• Choose molecular representations for similarity searches
• Keep experimental labels aligned after rejecting invalid molecules

Plan protein characterization experiments with Adaptyv's cloud laboratory, estimate costs, submit sequences, track progress, and retrieve measured results. Supports binding, thermal stability, expression, fluorescence, and enzyme activity workflows through the API and Python SDK.

• Plan binding screens for candidate protein sequences
• Estimate experiment costs before submission
• Track laboratory progress and retrieve results

Use hosted DNA models to predict gene structures, expression levels, and regions that regulate gene activity. Start from a gene symbol, genomic coordinates, or a DNA sequence, without installing model weights or running a local GPU.

• Finding promoter regions in a DNA sequence
• Predicting splice donor and acceptor sites
• Estimating gene expression for a specified cell type

Investigate how DNA variants may affect gene activity using precomputed AlphaGenome Atlas results and model predictions. Rank candidate variants, examine tissue-specific effects, and inspect the features behind scores to develop research hypotheses about biological mechanisms.

• Ranking candidate variants from a VCF
• Examining tissue-specific effects on gene activity
• Comparing reference and altered DNA predictions

Deploy and operate AI agents with AWS Bedrock AgentCore. Choose services for hosting agents, connecting external APIs, managing credentials and conversation state, monitoring activity, and assessing agent quality through automated evaluations.

• Plan an agent deployment on AgentCore
• Expose a REST API as an agent tool through MCP
• Configure credentials and access controls

Automate Amplitude tasks through Rube MCP and Composio. Send tracking events, retrieve user activity, update user properties, and manage cohorts, saved groups of users, with checks for identifiers and asynchronous update status.

• Send page view and purchase events
• Retrieve a specific user's event history
• Update user plans and other properties