Results for “databases”

Execute read-only SQL queries against multiple PostgreSQL databases. Use when: (1) querying PostgreSQL databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.

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Execute read-only SQL queries against multiple Microsoft SQL Server databases. Use when: (1) querying MSSQL/SQL Server databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.

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Work with MongoDB (document database, BSON documents, aggregation pipelines, Atlas cloud) and PostgreSQL (relational database, SQL queries, psql CLI, pgAdmin). Use when designing database schemas, writing queries and aggregations, optimizing indexes for performance, performing database migrations, configuring replication and sharding, implementing backup and restore strategies, managing database users and permissions, analyzing query performance, or administering production databases.

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Unified CLI/Python interface to 20+ genomic databases. Gene lookups (Ensembl search/info/seq), BLAST/BLAT, AlphaFold, Enrichr enrichment, OpenTargets disease/drug, CELLxGENE single-cell, cBioPortal/COSMIC cancer, ARCHS4 expression. Spans genomics, proteomics, disease. For batch/advanced BLAST use biopython; for multi-DB Python SDK use bioservices.

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Access and utilize open construction pricing databases. Match BIM elements to standardized work items, calculate costs using public unit price databases with 55,000+ work items.

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Provision and manage RDS databases. Configure backups, replication, and security. Use when deploying managed relational databases on AWS.

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Execute read-only SQL queries against multiple PostgreSQL databases. Use when: (1) querying PostgreSQL databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.

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Resolves rsIDs, navigates RsMergeArch/SNPHistory merge chains, and converts between rsID, SPDI, HGVS, and VCF representations using the dbSNP Build 156 JSON architecture. Use when normalizing variant identifiers, joining variant databases by cluster ID, or tracking deprecated rsIDs through historical merges.

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Build cloud backend applications with Encore — type-safe backend framework with built-in infrastructure. Use when someone asks to "build a backend", "Encore", "type-safe API framework", "backend with built-in infra", "auto-provision cloud resources", or "backend framework with databases built-in". Covers API definition, databases, pub/sub, cron, and auto-provisioned infrastructure.

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Plans and scripts data migrations between SQL databases: schema mapping, type conversion, batched and resumable loading, validation and cutover. Use when the user mentions "data migration," "database migration," "migrate from MySQL to PostgreSQL," "schema migration," "ETL pipeline," "data transfer," "database consolidation," "legacy migration," or "move data between databases." Covers schema analysis, mapping, transformation, batch processing, validation, and cutover planning. For query optimization during migration, see sql-optimizer.

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Deploy and manage applications, databases, and services on Coolify. Use when a user asks to deploy an app to Coolify, manage Coolify deployments, check deployment logs, sync environment variables, create or manage databases on Coolify, trigger a deployment, manage Coolify servers, or troubleshoot Coolify issues. Covers the Coolify CLI and REST API. For infrastructure provisioning on Hetzner, see hetzner-cloud.

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ACSets (Attributed C-Sets): Algebraic databases with Specter-style bidirectional

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Work with MongoDB (document database, BSON documents, aggregation pipelines, Atlas cloud) and PostgreSQL (relational database, SQL queries, psql CLI, pgAdmin). Use when designing database schemas, writing queries and aggregations, optimizing indexes for performance, performing database migrations, configuring replication and sharding, implementing backup and restore strategies, managing database users and permissions, analyzing query performance, or administering production databases.

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Guides users through discovering their database requirements, recommends a Google Cloud database based on a recommendation matrix, and assists in database creation. Use when a user asks 'What database service should I use?', 'Help me pick a database', or when a user wants to create a new database on Google Cloud. Don't use for general Google Cloud maintenance, managing existing databases, or database migrations.

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Manages clusters, instances, and backups for AlloyDB for PostgreSQL, and integrates with AlloyDB Model Context Protocol (MCP) tools for automated database operations. Use when creating, configuring, or administering AlloyDB databases. Do NOT use for general PostgreSQL instances (e.g. Cloud SQL) or other GCP databases.

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Comprehensive guide to designing reliable, scalable data systems covering databases, streaming, and consistency

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Auto-activate for pytest_databases, Docker DB fixtures, PostgreSQL/pgvector/ParadeDB, MySQL/MariaDB, Oracle/SQL Server, CockroachDB, MongoDB, Redis/Valkey, BigQuery/Spanner, MinIO, or RustFS. Not for mocked DBs.

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Prioritizes rare-disease variants from trio/quad WES/WGS with de novo (DeNovoGear, Triodenovo), compound-heterozygous phasing (WhatsHap), mosaic VAF tiering, phenotype-driven ranking (Exomiser, Phen2Gene, AMELIE), ClinGen gene-disease validity gating, and ACMG SF v3.2 secondary findings reporting. Use when running diagnostic exome / genome pipelines, identifying candidate Mendelian disease genes, screening for incidental findings, or auditing VUS reclassification cycles. The ACMG/AMP classification framework (PVS1 decision tree, Pejaver PP3/BP4 calibration, Tavtigian point system) is in clinical-databases/acmg-classification.

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Queries myvariant.info BioThings aggregator for ClinVar, gnomAD, dbSNP, dbNSFP, COSMIC, CADD, and CIViC annotations in batched, version-tracked requests. Use when annotating variant lists from multiple databases simultaneously without managing per-source APIs, and when reproducibility-grade analyses require recording source data versions via _meta.

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Resolves rsIDs, navigates RsMergeArch/SNPHistory merge chains, and converts between rsID, SPDI, HGVS, and VCF representations using the dbSNP Build 156 JSON architecture. Use when normalizing variant identifiers, joining variant databases by cluster ID, or tracking deprecated rsIDs through historical merges.

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Expert-level materials informatics covering materials databases, machine learning for property prediction, high-throughput computation, and data-driven materials discovery.

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Render CLIを使用したクラウドサービス管理の専門スキル。デプロイ、ログ監視、SSH接続、PostgreSQL接続、サービス管理などRenderプラットフォームのCLI操作を効率的に支援。定期的に公式ドキュメントをチェックして最新情報を取得。Use when managing Render services via CLI, deploying applications, viewing logs, connecting to databases, or automating cloud infrastructure tasks.

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Query physics databases — NIST CODATA constants, NIST Chemistry WebBook, Materials Project, Particle Data Group (PDG), OEIS sequences. Always use these instead of hardcoding physical constants.

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Read data from Lyrion's SQLite databases — library stats, stored lyrics, album covers, recent plays. Use this whenever a task queries `library.db` or `persist.db`, adds or changes a statistic, or touches `services/database.py`. Covers the read-only connection model (RO open + `ATTACH persist.db`), the key tables, the `play_counts` view over the Alternative Play Count plugin, the single-flight stats cache, and why the app must never write to these DBs. Reach for it before writing any SQL against the Lyrion databases.

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