Turns a theory into falsifiable, pre-registerable hypotheses: DGP and DAG, identification, estimands, SESOIs, test choice among NHST, equivalence, and minimum-effect tests, scope conditions, and hypothesis tiers. Use when converting a research question into testable predictions or predicting a null.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Drafts or audits a scientific paper's introduction: real-world motivation, evidence audit, theory-to-if-then funnel with a named estimand, bridges across experiments, and calibrated contributions. Use to write, frame, or critique an introduction.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Draft a referee report on someone else's manuscript for a journal editor, using five adversarial finders, a Blue Team error filter, a Chief Reviewer synthesis, and a Tone Guard legal pass. Use when the user has been asked to referee a manuscript; self-audits go to paper-review-lite or presubmit, author responses to referee-response.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Designs multi-country survey experiments: case selection, localization and TRAPD translation, stimulus calibration, per-country power, and pooled versus per-country analysis with measurement-equivalence checks. Use when fielding the same experiment in several countries.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Read or convert documents (PDF, Office, OpenDocument, RTF, EPUB, CSV) in a research workflow: read directly or convert, pick the converter from document structure, and decide whether the Markdown is tracked or scratch. Use when a document must be read, quoted, summarized, searched, extracted, or added to a source library; scans go to $vlm-ocr.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Reviews a whole deliverable against its manifest without rewriting it — deterministic gate, per-section finders, a whole-work pass, and adjudicated findings.json and report.md with honest coverage. Use before shipping a deliverable or for the night shift.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
OCR scanned or image-only corpora with vision-language models in four phases: `triage` inventories the scans, identifies script and language, and shortlists models by script, hardware, and data constraints; `evaluate` picks a system by measured CER/WER against ground truth, using born-digital twins, a second reader, and decision rules set in advance; `run` builds the production pipeline; and `clean` removes model artifacts, audits what every cleaning rule deletes, corrects with rule-based and LLM passes, and records provenance. Born-digital documents with a text layer go to $doc-to-markdown; runs on Leiden's ALICE cluster add $vlm-ocr-alice.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Advises on setting up and validating topic models for survey and experimental text: discovery vs. measurement, STM/LDA/BERTopic choice, preprocessing, covariate formulas, choosing K across coherence, FREX, held-out likelihood, and residuals, validating topics against human coding, robustness, and reporting. Coding against a fixed codebook goes to text-classification.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Fact-check manuscript claims against their cited sources in a per-source Markdown knowledge base. Use to audit claim support, overclaiming, direction, scope, and misattribution after source intake is complete.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Consult an independent, read-only GPT-6 Astra advisor before committing to a substantive interpretation, approach, or final result. Not for routine work, implementation, or file edits. Uses gpt-6-astra at an effort matched to the question.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Designs and diagnoses list experiments (the item count technique): whether indirect measurement is warranted, control-list construction, design variants, estimators and assumption tests in the list package, and power. Use when measuring a sensitive item or debugging an implausible prevalence estimate.
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scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Designs conjoint and factorial-vignette experiments: attributes and restrictions, effective-N power, estimand choice among AMCE, marginal means, and AMIE, forced choice versus rating, and PAP tiers. Use when planning a conjoint, critiquing an attribute table, sizing respondents and tasks, or testing interactions.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Turns a raw Qualtrics conjoint export into analysis-ready long-format data: implementation identification, reshaping, choice-profile alignment, reference categories, and pilot exclusion. Use when a conjoint CSV needs cleaning, reshaping, or debugging before AMCE estimation.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Turns dictated captures in a deliverable's inbox/ into a proposed planning-wiki diff, classifying and tracing each statement; decisions need the author's assent. Use to intake notes or process the inbox.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
House rules and craft for LaTeX Beamer decks (storyboarding, slide prose, frame budgets, layout, XeLaTeX and Korean fonts, color, figures, Overleaf hygiene, build QA). Use to write, edit, review, or build a Beamer deck.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Plans a research project as a durable decision map, resolving one design decision per session until the design is defensible and pre-registerable. Use at project start, when a design has more open decisions than one conversation holds, or when planning keeps restarting. Not for running analyses or writing the paper.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Generates 3-5 conceptually distinct approaches (Novel, Surprising, Diverse, Conventional) and holds for selection before implementing. Use before committing to an approach when a task has more than one non-obvious solution; --codex delegates the brainstorm to a fresh subagent.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Opens a talk, module, paper, chapter, or referee report as a multi-session deliverable. Interviews the author, then scaffolds deliverable.yml, HANDOFF.md, the planning/ wiki, inbox/, and checks/. Use for deadline-driven work spanning sessions.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Audits a manuscript's citations for fabricated or nonexistent sources, DOIs that resolve to a different work, mismatches between in-text citations and the reference list, APA 7 or journal style, and whether each source supports the claim it is attached to. Checks entries against Crossref, OpenAlex, and DataCite and labels anything it could not verify NOT CHECKED. Use to check citations, references, a .bib file, or DOIs, or when a source may be AI-invented. Figures and tables go to figure-table-audit.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Reviews an existing conjoint study for threats to inference and returns severity-ranked findings on design, estimation, measurement error, external validity, and interpretation. Use when checking whether a conjoint design or analysis holds up, or answering referee comments on one.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Scaffold or audit a research-project repository organized around its source library (PDFs, Markdown conversions, bibliography, intake pipeline) plus the analysis, manuscript, and review folders it needs. Use when starting or auditing a research repo. Not for one-PDF intake or publication replication packages.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Start-of-session report on where a repository stands. Reads the project's own handoff and log files, checks live git state, and reports objective, verified baseline, open tasks, blockers, and next actions. Use when resuming work. Twin of finished.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Scaffold or audit a social-science replication package, and audit the manuscript and archived research objects against FAIR. Use when setting up or repairing a package, checking one before submission, or drafting data, code, and materials availability statements. Adapted from Yusaku Horiuchi's replication-package-guide.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026
Organize an author's response to peer review: extract every referee point, order the revision by dependency, flag possible pushbacks, and build the response-letter skeleton the author fills in. Use for revise-and-resubmit planning, response letters, or checking every point was answered.
The English summary is being prepared. Showing the original description.
scdenney/open-science-skills☆ 69Updated Oct 20, 2026