Results for “matplotlib”

3Dmol.js WebGL molecular visualization emitted as self-contained HTML. Render structures (PDB/SDF/XYZ/MOL2/cube) with stick, sphere, cartoon, line, and surface styles; animate trajectories with a frame-delay (interval, ms) control; and animate vibrational normal modes via vibrate() from per-atom dx/dy/dz displacements or from precomputed frames. Output standalone HTML that loads 3Dmol from a CDN, with optional play/pause and speed controls. Use for transition-state imaginary-mode animations, MD or reaction-path playback, docking poses, and orbital/density isosurfaces. For static 2D chemical structure drawings use rdkit-chemdraw-cdxml; for 2D statistical plots use matplotlib or plotly.

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omics-plotting: publication-style figure authoring for omics / bioinformatics results with matplotlib / seaborn. Read this before writing any plotting or figure code in any omics analysis — RNA-seq, proteomics, single-cell, variant, or database results — not only when a plot is explicitly requested: whenever an analysis will produce a figure, load this first and follow its recipes. Covers volcano, MA, expression / correlation heatmap, GSEA bar / dot plot, box / violin / bar / ridgeline, PCA / UMAP / t-SNE scatter, Kaplan–Meier, Manhattan / QQ / forest. Supplies a shared journal-ready style and copy-paste recipes so every figure looks like one consistent system. To combine several plots into ONE multi-panel composite figure, use the sibling `multipanel` skill.

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Guide for annotating statistical significance (p-value asterisks) on comparison plots. Covers standard notation (ns, *, **, ***, ****), matplotlib bracket+asterisk implementation, and use with seaborn box/violin/bar plots. Use when preparing publication-ready figures with significance markers.

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Create visualizations for construction data. Generate charts, graphs, heatmaps, and interactive dashboards using Matplotlib, Seaborn, and Plotly for project analysis and reporting.

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Create, polish, and troubleshoot figures4papers-style publication-ready matplotlib figures, including grouped bars, trends, radar charts, heatmaps, concept diagrams, manifolds, and high-DPI/vector export workflows.

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Create effective data visualizations with Python (matplotlib, seaborn, plotly). Use when building charts, choosing the right chart type for a dataset, creating publication-quality figures, or applying design principles like accessibility and color theory.

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Create clear, effective charts and dashboards from structured data using matplotlib, seaborn, and plotly. Use when the user requests data visualization or provides relevant inputs for this workflow.

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Use this when creating, modifying, reviewing, or saving charts, figures, plots, or visual summaries — including matplotlib/seaborn code, EDA figures, report figures, dashboards, or any task involving Japanese chart labels, color palettes, or figure styling.

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Compose polished charts (timeseries, bar, line, area, pie, scatter, or anything else the data calls for) from tabular data using the chartkit primitives, producing PNG, SVG, or self-contained interactive HTML. Use when the user asks to chart, graph, plot, or visualize data and wants something better than raw matplotlib defaults.

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Use when 用户请求选择、创建、改进或统一数据可视化，并需按数据与意图选择图表、主题及 D3.js、ECharts、Mapbox、Three.js、Matplotlib、Plotly 或 ggplot2 技术栈。

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Create standardized charts and visual assets from analytics query results. Prefer dependency-free plain HTML/CSS/JavaScript/SVG for interactive exploratory charts; use local plotting tools such as matplotlib, seaborn, or Plotly when static/report-ready exports or specialized charting libraries are more appropriate. Use for trends, comparisons, distributions, report assets, CSV-to-chart work, and presentation-ready data visuals.

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Create standardized charts and visual assets from analytics query results. Prefer dependency-free plain HTML/CSS/JavaScript/SVG for interactive exploratory charts; use local plotting tools such as matplotlib, seaborn, or Plotly when static/report-ready exports or specialized charting libraries are more appropriate. Use for trends, comparisons, distributions, report assets, CSV-to-chart work, and presentation-ready data visuals.

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Use when analyzing pcap or pcapng files, triaging network captures, labeling IPs with evidence, generating PNG charts, or writing packet analysis reports. Keywords: pcap, pcapng, tshark, Wireshark, scapy, DNS, TLS SNI, RDAP, graph, matplotlib, gnuplot, packet capture.

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Chọn đúng biểu đồ, kể chuyện với số liệu, và tránh误导 — dựa trên nguyên tắc từ Kieran Healy (Data Visualization, Princeton 2019) và taxonomy từ AntV chart-visualization-skills. Dùng khi cần quyết định loại chart, trình bày insight cho stakeholder, hoặc kiểm tra xem figure có gây hiểu lầm không. Để vẽ Python thực tế, chuyển sang matplotlib / seaborn / scientific-visualization.

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Create effective data visualizations with Python (matplotlib, seaborn, plotly). Use when building charts, choosing the right chart type for a dataset, creating publication-quality figures, or applying design principles like accessibility and color theory.

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Use when designing, redrawing, or validating research-paper figures and tables, including Matplotlib plots, LaTeX tables, benchmarks, captions, legends, annotations, color, and typography. Preserves exact evidence and checks rendered PDFs for clipping, overlap, and readability.

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Use when maintaining sports field visualization or Tkinter GUI and standalone CLI integration with Matplotlib.

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Compose multi-panel publication figures with patchwork, cowplot, gridExtra (R), or matplotlib GridSpec/subfigures (Python) including shared axes/legends/guides collection, panel labels in Nature/Cell convention, and journal-spec sizing. Covers patchwork ≥1.2.0 axes='collect' feature, Type-42 font embedding, and the cairo_pdf save path. Use when composing 2+ subpanels into a single figure for journal submission.

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Build volcano and MA plots from differential-expression / association results with LFC shrinkage, FDR-adjusted thresholds, sensible label placement, and axis-truncation conventions. Covers EnhancedVolcano, ggplot2, matplotlib, and the apeglm/ashr/normal shrinkage decision. Use when visualizing differential-expression results (RNA-seq, ChIP-seq, ATAC-seq, proteomics) or any per-feature effect-size + p-value table.

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学术论文图表生成与设计。输入是实验数据（CSV/表格）、图表草稿、论文方法描述、中文图/表说明、想生成的图形摘要（GA）、或想画流程图时使用。功能包括：matplotlib 绘图（plot）、图表类型推荐（recommend）、英文图/表标题生成（caption）、论文架构图 prompt 生成（architecture）、图形摘要 prompt 生成（abstract）、流程图 prompt 生成（flowchart）、图表规范检查（polish）、概念图/示意图设计（design）。架构图模板覆盖 6 类场景，流程图覆盖 6 类（线性 / 分支 / 并行 / 循环 / 嵌套 / 泳道），图形摘要覆盖 5 类。内置 prompt 工程词汇表与参数化语法。不适用于：正文段落润色（用 academic-writing）、参考文献格式（用 academic-citation）。

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Submission-grade remote-sensing Nature/high-impact journal figure workflow for Python or R. Use whenever the user asks to create, revise, audit, or polish manuscript figures, multi-panel scientific plots, map-led composites, remote-sensing image plates, sensor/product workflow figures, validation/error/uncertainty panels, or journal-ready SVG/PDF/TIFF outputs, especially for Nature-family, Remote Sensing of Environment, ISPRS, IEEE TGRS, or other high-impact venues. Before plotting, define the figure's conclusion, evidence logic, export needs, and review risks. If the user has not chosen Python or R, ask "Python or R?" and stop. Use only the selected backend for figure generation, previewing, exporting, and QA. Supports matplotlib/seaborn and ggplot2/patchwork/ComplexHeatmap. Not for dashboards or Illustrator/Figma-first infographics. Also trigger on general academic-writing figure needs even without the word "Nature", such as making figures/plots for a paper, scientific/academic plotting, data visualization for a manuscript, and Chinese phrasings like 遥感论文配图、学术写作配图、科研绘图、科研作图、地图出图、论文图表、可视化.

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Guidelines for data analysis and Jupyter Notebook development with pandas, matplotlib, seaborn, and numpy.

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Data analysis best practices with pandas, numpy, matplotlib, seaborn, and Jupyter notebooks.

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Expert guidance for data analysis, visualization, and Jupyter Notebook development with pandas, matplotlib, seaborn, and numpy.

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