332 skills · sorted by relevance
Manage Zotero reference libraries through Python: search, create, update, and delete records, organize collections and tags, upload PDF attachments, and export citation data for research workflows.
Supports pathology image analysis in Python, from loading whole-slide images to normalizing stain colors, identifying cell nuclei, mapping spatial relationships, and training machine learning models. It also covers multiplex imaging and marker measurements.
Analyze time series, observations ordered over time, using aeon in Python. Build classification, prediction, and clustering workflows, detect unusual patterns or changes, and compare methods through an interface compatible with scikit-learn.
Find PhysicsNeMo models, data loading pipelines, and examples for machine learning tasks involving physical systems. The skill checks current repository files, presents relevant alternatives, and suggests a reading order without writing training code.
Export existing medical AI inference results to MLflow, a system for recording machine learning runs. Preview sanitized metadata, parameters, reproducibility details, and engineering quality metrics before export, with optional image artifacts under explicit upload policies.
Integrate a machine learning weather model into Earth2Studio for forecasts that advance through time. The skill guides wrapper implementation, coordinate handling, model loading, tests, dependency declarations, and documentation updates using a reference inference script.
Provides AI and machine learning techniques for CTF challenges. Use when attacking ML models, crafting adversarial examples, performing model extraction, prompt injection, membership inference, training data poisoning, fine-tuning manipulation, neural network analysis, LoRA adapter exploitation, LLM jailbreaking, or solving AI-related puzzles.
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Azure Machine Learning SDK v2 for Python. Use for ML workspaces, jobs, models, datasets, compute, and pipelines. Triggers: "azure-ai-ml", "MLClient", "workspace", "model registry", "training jobs", "datasets".
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Calculates molecular descriptors and fingerprints using RDKit. Computes Morgan fingerprints (ECFP), MACCS keys, Lipinski properties, QED drug-likeness, TPSA, and 3D conformer descriptors. Use when featurizing molecules for machine learning or filtering by drug-likeness criteria.
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This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
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Machine learning toolkit for genomic interval (BED) data; use it when you need to tokenize BED collections and train embeddings for regions/cells/labels, build consensus peak universes, or run similarity search and downstream ML on chromatin accessibility datasets.
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Generates complete conventional non-oncology diagnostic machine-learning research designs from a user-provided disease context, optional mechanism theme, and validation direction. Use when a study centers on disease-vs-control transcriptome comparison, optional mechanism-gene restriction, feature shrinkage, diagnostic model construction, ROC / calibration / DCA evaluation, interpretation layers, and orthogonal validation. Covers five study patterns and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.
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Generates complete tumor immune-infiltration-guided bulk-transcriptome diagnostic biomarker and machine-learning research designs from a user-provided cancer type and study direction. Always use this skill whenever a user wants to design, plan, or build a tumor bioinformatics study centered on differential expression, immune infiltration estimation, immune-linked module discovery, consensus feature selection, diagnostic modeling, nomogram construction, clinical association, and optional prognostic extension or validation. Covers five study patterns (immune-cell-first diagnostic workflow, immune-module-to-biomarker workflow, consensus-ML biomarker workflow, diagnostic-plus-prognostic hybrid workflow, translational validation workflow) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, reference literature pack, and self-critical risk review.
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High-performance numerical computing and machine learning workflows using JAX. Supports array operations, automatic differentiation, JIT compilation, RNN-style scans, map/reduce operations, and gradient computations. Ideal for scientific computing, ML models, and dynamic array transformations.
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An overview of the core model API of SeisBench, a Python framework for training and applying machine learning algorithms to seismic data. It is useful for annotating waveforms using pretrained SOTA ML models, for tasks like phase picking, earthquake detection, waveform denoising and depth estimation. For any waveform, you can manipulate it into an obspy stream object and it will work seamlessly with seisbench models.
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Design ML pipelines covering data preparation, model training, deployment, monitoring, and continuous improvement. Use when coordinating an end-to-end MLOps workflow.
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Master Godot 4 GDScript patterns including signals, scenes, state machines, and optimization. Use when building Godot games, implementing game systems, or learning GDScript best practices.
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Expert data scientist for advanced analytics, machine learning, and statistical modeling. Handles complex data analysis, predictive modeling, and business intelligence. Use PROACTIVELY for data analysis tasks, ML modeling, statistical analysis, and data-driven insights.
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Machine learning experimentation reference for model-experimentation conventions, experiment tracking and reproducibility, dataset and model abstractions, ML engagement fundamentals, and model-production readiness. Use when standing up ML experimentation infrastructure or assessing whether a trained model is ready for production.
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Use when positioning an AISTATS submission against AI, machine-learning, statistics, and uncertainty literature, including arXiv preprints, workshop versions, concurrent submissions, prior conference versions, PMLR archival status, and the two-community citation coverage that AISTATS reviewers expect.
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Map N6-methyladenosine (m6A) RNA modifications at single-nucleotide resolution using miCLIP (Linder 2015), miCLIP2 + m6Aboost machine learning (Kortel 2021), GLORI (Liu 2023, antibody-free chemical conversion), DART-seq (Meyer 2019, APOBEC1-YTH fusion), m6Anet (nanopore direct RNA), or MeRIP-seq with calibration. Use when distinguishing antibody-based from antibody-free m6A detection methods, applying the DRACH motif constraint, reconciling cross-method disagreements (DART 44% in DRACH vs GLORI), or detecting m6Am at the cap.
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Integrate Core ML models in iOS apps for on-device machine learning inference. Covers model loading (.mlmodel, .mlpackage, .mlmodelc), predictions with auto-generated classes and MLFeatureProvider, compute unit configuration (CPU, GPU, Neural Engine), MLTensor, VNCoreMLRequest, MLComputePlan, multi-model pipelines, and deployment strategies. Use when loading Core ML models, making predictions, configuring compute units, or profiling model performance.
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Quantum machine learning and differentiable quantum computing
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Genomic interval machine learning for regulatory element analysis
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