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cccskills

Results for “alignment”

695 skills · sorted by relevance

Checks how company strategy connects to department, team, and individual goals. Identifies disconnected or conflicting goals, missing ownership, departmental silos, and communication gaps, then guides workshops, shared measures, and quarterly reviews to restore alignment.

  • Reviewing links between company and team goals
  • Finding conflicts between departmental goals
  • Assigning ownership to neglected company objectives
alirezarezvani/claude-skills28.4KUpdated Aug 30, 2026

simpo-training

FreeSummary

Guide language model training with SimPO using pairs of preferred and rejected answers. Covers configuration, learning rate tuning, and memory troubleshooting for preference alignment, which adjusts model responses toward human preferences without a separate reference model.

  • Training on preferred and rejected answer pairs
  • Exploring an alternative to DPO without a reference model
  • Tuning preference training for math and code tasks
Orchestra-Research/AI-Research-SKILLs13.7KUpdated Oct 11, 2026

simpo-training

FreeSummary

Train language models with SimPO using pairs of preferred and rejected answers. Configure preference training without a separate reference model, adapt settings for base or instruction models, and address unstable training, memory limits, or lost capabilities.

  • Training a base model with preferred and rejected answers
  • Further tuning an instruction model with preference data
  • Adjusting training settings for math and code tasks
davila7/claude-code-templates32.7KUpdated Oct 18, 2026

Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion, or alignment statistics/filtering.

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aipoch/medical-research-skills2KUpdated Sep 17, 2026

Requirements for a Salesforce Enterprise Territory Management (ETM) territory design: alignment criteria, coverage model selection, assignment rule logic, hierarchy depth and breadth, and user-to-territory ratios. Trigger keywords: territory design, territory alignment, territory model requirements, sales coverage model, territory criteria, geographic territory, named account territory, overlay territory. NOT for ETM setup steps — use admin/enterprise-territory-management. NOT for loading territory assignment data — use data/territory-data-alignment. Trigger keywords: territory design questionnaire, territory requirements document, assignment rule matrix, territory type priority, realignment plan, territory access level decision, accountAccessLevel, opportunityAccessLevel, ObjectTerritory2Association, UserTerritory2Association, Planning state model, territory acceptance tests.

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PranavNagrecha/AwesomeSalesforceSkills19Updated Oct 4, 2026

watchdog

FreeSummary

Design OpenRig watchdog policies for stalled or drifting agent work. Choose a small wake-up message, a refocus, or a broader alignment check, and separate monitoring frequency from notification frequency using evidence about owners and artifacts.

  • Choosing an intervention for an inactive task owner
  • Drafting messages that correct workflow drift
  • Separating monitoring and notification intervals
mvschwarz/openrig7.8KUpdated Oct 19, 2026

NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-hosted APIs (health.api.nvidia.com) on every call. Use local NIM containers for confidential or proprietary sequences. Run a complete protein structure prediction pipeline using NVIDIA BioNeMo NIMs: search for MSA alignments with MSA-Search (ColabFold), then predict the structure with OpenFold3 using the retrieved alignments. Use this skill whenever the user wants to predict a protein structure with maximum accuracy using MSA context, run the full AlphaFold3-style pipeline, generate MSA-informed structure predictions, or improve structure prediction accuracy by providing evolutionary information. Triggers on: MSA structure prediction pipeline, structure prediction pipeline, MSA-informed prediction, OpenFold3, ColabFold MSA, AlphaFold3 pipeline, protein structure, homology search, a3m alignment, UniRef30, NIM microservice. This pipeline chains MSA-Search and OpenFold3.

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NVIDIA/skills3.6KUpdated Oct 18, 2026

Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.

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FreedomIntelligence/OpenClaw-Medical-Skills3.1KUpdated Jul 21, 2026

Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.

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FreedomIntelligence/OpenClaw-Medical-Skills3.1KUpdated Jul 21, 2026

Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.

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GPTomics/bioSkills1.2KUpdated Aug 15, 2026

Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.

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GPTomics/bioSkills1.2KUpdated Aug 15, 2026

Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other post-alignment metrics. Use when verifying alignment data quality before variant calling or quantification.

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GPTomics/bioSkills1.2KUpdated Aug 15, 2026

Align short reads using Bowtie2 with local or end-to-end modes. Supports gapped alignment. Use when aligning ChIP-seq, ATAC-seq, or when flexible alignment modes are needed.

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BioTender-max/awesome-bio-agent-skills202Updated Jul 2, 2026

Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.

The English summary is being prepared. Showing the original description.

BioTender-max/awesome-bio-agent-skills202Updated Jul 2, 2026

Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other post-alignment metrics. Use when verifying alignment data quality before variant calling or quantification.

The English summary is being prepared. Showing the original description.

BioTender-max/awesome-bio-agent-skills202Updated Jul 2, 2026

🇺🇸 Your dev team ships features nobody asked for while user-reported bugs pile up for months. Operations blames engineering for ignoring users; engineering blames operations for not understanding technical constraints. This gives you the complete Product × Engineering × Operations alignment SOP — from unified backlog to 10-day sprint cadence to veto power rules. What's inside: • Dual-layer Kanban system (master backlog + sprint board with unified tagging) • 10-day sprint standard process (Day 1 dev → Day 6 testable build → Day 10 ship) • Issue template with reproducibility requirements (3x reported = auto-severe) • Tri-party alignment meetings (daily standup / sprint planning / sprint review) • Operations veto power on releases (P0 bug = block shipping) • User feedback → product iteration closed loop (beta testing + interview SOP) • Core metrics framework (acquisition → activation → retention → monetization → referral) • Technical debt management (20-30% sprint capacity reserved) • Ready-to-use templates: Bug Report, Sprint Planning, Responsibility Matrix Built from: Real product strategy meetings + beta testing frameworks. References Supabase sprint model, Manus/DeepSeek commercialization alignment. By @WeiYipei. 🇨🇳 你的研发团队在做没人要的新功能,用户反馈的 Bug 堆了三个月没人动。运营觉得研发不听用户,研发觉得运营不懂技术。这份 SOP 给你从统一看板到 10 天迭代节奏到一票否决权的完整产研运协同框架。 🇯🇵 開発チームは誰も求めていない機能を作り、ユーザーから報告されたバグは何ヶ月も放置。このSOPは、統一バックログから10日スプリント、リリース拒否権まで、プロダクト×エンジニアリング×オペレーションの完全な連携フレームワークを提供します。 🇰🇷 개발팀은 아무도 요청하지 않은 기능을 만들고, 사용자가 보고한 버그는 몇 달째 방치됩니다. 이 SOP는 통합 백로그부터 10일 스프린트, 릴리스 거부권까지 제품×개발×운영 완전 협업 프레임워크를 제공합니다. Triggers: "product ops" | "engineering operations" | "product development SOP" | "sprint planning" | "iteration management" | "cross-functional alignment" | "product engineering ops" | "dev ops collaboration" | "产研运协同" | "迭代管理" | "产品研发运营" | "プロダクト開発運営" | "제품개발운영"

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Gingiris-1031/gingiris-skills86Updated Oct 15, 2026

Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other post-alignment metrics. Use when verifying alignment data quality before variant calling or quantification.

The English summary is being prepared. Showing the original description.

lilinji/GeneTind-Life-Skills15Updated Aug 21, 2026

Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.

The English summary is being prepared. Showing the original description.

lilinji/GeneTind-Life-Skills15Updated Aug 21, 2026

Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.

The English summary is being prepared. Showing the original description.

lilinji/GeneTind-Life-Skills15Updated Aug 21, 2026

Cascades strategy from boardroom to individual contributor. Detects and fixes misalignment between company goals and team execution. Covers strategy articulation, cascade mapping, orphan goal detection, silo identification, communication gap analysis, and realignment protocols. Use when teams are pulling in different directions, OKRs don't connect, departments optimize locally at company expense, or when user mentions alignment, strategy cascade, silo, conflicting OKRs, or strategy communication.

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mouadja02/skills10Updated Oct 17, 2026

Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.

The English summary is being prepared. Showing the original description.

peacezha/TRACE3Updated Oct 18, 2026

Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.

The English summary is being prepared. Showing the original description.

peacezha/TRACE3Updated Oct 18, 2026

Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other post-alignment metrics. Use when verifying alignment data quality before variant calling or quantification.

The English summary is being prepared. Showing the original description.

peacezha/TRACE3Updated Oct 18, 2026

Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.

The English summary is being prepared. Showing the original description.

peacezha/HPClaw3Updated Oct 11, 2026