978 skills · sorted by relevance
Add a lightweight iOS App Clip to an Expo app so people can launch it from a website URL. Covers domain association, website launch cards, permissions, TestFlight submission, and App Clip metadata.
Create external Paperclip plugins using command-line tools. Scaffold a package, install it into a local Paperclip instance, rebuild as you edit, and check types, tests, and builds before reporting the plugin’s status.
Create Paperclip tasks, add progress comments, update statuses, and list assignments from Hermes. A helper uses API credentials with restricted permissions to keep task creation and updates within approved work boundaries.
Preprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI extraction, adapter trimming, length filtering, and post-alignment PCR-duplicate collapse. Use when raw CLIP FASTQ must be turned into deduplicated, crosslink-preserving BAM input for peak calling; choosing between two-pass and single-pass adapter trimming; deciding minimum read length; or mapping UMI patterns to specific eCLIP/iCLIP/iCLIP2/iCLIP3 library preps.
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Preprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI extraction, adapter trimming, length filtering, and post-alignment PCR-duplicate collapse. Use when raw CLIP FASTQ must be turned into deduplicated, crosslink-preserving BAM input for peak calling; choosing between two-pass and single-pass adapter trimming; deciding minimum read length; or mapping UMI patterns to specific eCLIP/iCLIP/iCLIP2/iCLIP3 library preps.
The English summary is being prepared. Showing the original description.
Preprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI extraction, adapter trimming, length filtering, and post-alignment PCR-duplicate collapse. Use when raw CLIP FASTQ must be turned into deduplicated, crosslink-preserving BAM input for peak calling; choosing between two-pass and single-pass adapter trimming; deciding minimum read length; or mapping UMI patterns to specific eCLIP/iCLIP/iCLIP2/iCLIP3 library preps.
The English summary is being prepared. Showing the original description.
Preprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI extraction, adapter trimming, length filtering, and post-alignment PCR-duplicate collapse. Use when raw CLIP FASTQ must be turned into deduplicated, crosslink-preserving BAM input for peak calling; choosing between two-pass and single-pass adapter trimming; deciding minimum read length; or mapping UMI patterns to specific eCLIP/iCLIP/iCLIP2/iCLIP3 library preps.
The English summary is being prepared. Showing the original description.
Preprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI extraction, adapter trimming, length filtering, and post-alignment PCR-duplicate collapse. Use when raw CLIP FASTQ must be turned into deduplicated, crosslink-preserving BAM input for peak calling; choosing between two-pass and single-pass adapter trimming; deciding minimum read length; or mapping UMI patterns to specific eCLIP/iCLIP/iCLIP2/iCLIP3 library preps.
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Track pull requests opened by a Paperclip instance, explain their purpose, and assess whether their latest changes are ready to merge. Dispatch preparation work for unresolved problems and publish an evidence-based report without merging anything.
Prepare Paperclip changes for a pull request by organizing commits, updating the branch, writing the description, addressing automated review feedback, and checking tests and CI before reporting the result for handoff.
Manage an AI-agent company in Paperclip through conversation. Set up the company, hire and configure agents, handle approvals, track tasks and spending, and review work products, with summaries and links to the relevant web pages.
Use an assigned Slack bot to read shared conversations, search accessible discussions, summarize with source links, and send messages or files. It connects Slack collaboration with Paperclip tasks and routines while respecting channel access and delivery status.
Build or modify adapters that connect Paperclip to AI agent runtimes. Covers server execution, configuration forms, terminal output, session persistence, and environment checks for CLI agents, HTTP endpoints, and custom processes.
Prepare and submit requests to add agents in Paperclip. Check hiring permissions, compare existing configurations, and define the role, instructions, reporting line, and runtime settings, then handle approval and follow-up for linked tasks.
Turn bundled Paperclip issues, comments, and documents into readable wiki updates covering project purpose, current progress, decisions, risks, and next actions, while preserving existing knowledge and citing the supporting activity.
Start and repair isolated Paperclip development workspaces through managed services. Restore a full database clone when needed, then verify login, populated data, health, service visibility, and whether the process using the port belongs to the intended workspace.
Select, inspect, validate, and report Paperclip evaluations for Runner protocol behavior or complete product workflows. Interpret results with evidence, source revisions, costs, and failure categories, and refresh reports from retained evidence without new provider calls.
Create, implement, or review Paperclip capsule visuals that represent agents and their status. Apply the rules for each visual type, document settings for reproducible assets, and provide static alternatives for animated effects.
Build and update Paperclip interfaces using shared rules for colors, typography, status indicators, layouts, and interactions. Reuse existing components and keep the component catalog and showcase page aligned with new or changed interface elements.
Tidy a Paperclip Mine inbox by scanning entries and grouping archive candidates by work status and inactivity. Present checkbox confirmations, then archive only accepted selections, with undo details and no changes to the underlying tasks, branches, or workspaces.
Write or revise a Paperclip plan that states the intended outcome, constraints, approach, and success checks. Capture unresolved decisions, maintain the saved plan, and request approval when the work requires it.
Research MCP connections, which let agents use external tools, and vendor integrations for Paperclip. Produce an evidence-backed planning pull request, obtain human approval for its exact revision, then implement and verify each approved connection separately.
Turn an idea, post, or task into a skill for the Paperclip catalog. Search for existing skills first, then reference, adapt, or author one, add worked examples where applicable, validate the catalog, and prepare a pull request.
Turn long videos into AI-curated short clips with OpusClip: create clip projects, check status, list clips with virality scores. Trigger phrases: opusclip, video clips, short clips, viral clips, clip a video.
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