125 skills · sorted by relevance
Clean Quarto documents by converting leftover LaTeX commands into Quarto and Pandoc syntax. Update citations, cross-references, figures, tables, and formatting for HTML, PDF, and Word output, with a report of changes and items needing manual review.
Convert LaTeX papers and reports into Typst documents, including structure, formatting, equations, figures, tables, citations, and cross-references. Reference guides and symbol mappings help translate individual commands or migrate an entire article.
Convert LaTeX article manuscripts into Quarto documents for publishing as HTML, PDF, or Word. Preserve mathematical content while adapting document settings, citations, figures, tables, and cross-references, and receive a report of items needing manual review.
Look up RNA entries in RNAcentral by identifier or targeted search, retrieve cross-references to related database records, and receive concise summaries. Raw JSON output is also available when requested for further processing.
Convert authored markdown into a polished self-contained HTML document with a table of contents, numbered figures and tables, cross-references, footnotes, and print-ready CSS. Use when publishing a report, whitepaper, or memo.
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Find and fix broken internal links, dead external URLs, stale imports, missing cross-references, and orphaned files. Ensures all project references remain valid and up-to-date. Use when documentation contains broken internal links, external URLs return 404 errors, import statements reference moved or deleted modules, cross-references between files are out of sync, or files exist but are never referenced anywhere in the project. Also use in index mode for a directory of markdown notes with a designated index, such as an agent-memory store, where an orphan is a file the index does not link to.
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Evolve an existing skill by refining its content in-place or creating an advanced variant. Covers assessing the current skill, gathering evolution requirements, choosing scope (refinement vs. variant), applying changes, updating version metadata, and synchronizing the registry and cross-references. Use when a skill's procedure steps are outdated, user feedback reveals gaps, a skill needs a complexity upgrade, an advanced variant is needed alongside the original, or related skills are added and cross-references are stale.
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Health-check the project knowledge base. Looks for contradictions between files, stale claims that newer sources have superseded, orphan files with no inbound cross-references, important concepts mentioned but lacking their own page, missing cross-references, and data gaps. Returns a structured report; does not auto-fix.
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Cleans a Quarto (.qmd) file by replacing LaTeX holdovers with proper Quarto/Pandoc syntax so the document renders correctly to HTML, PDF (Typst/LaTeX), and Word. Fixes citations (\citep → [@key]), cross-references (\ref → @label), figures (\includegraphics → markdown), tables, text formatting (\textbf → **bold**), inline math (\( \) → $ $), hyperlinks (\href → [text](url)), footnotes (\footnote → ^[]), list environments, section headings, and R Markdown chunk options (dot-style → #| YAML). Use when asked to clean, fix, modernize, or port a Quarto or R Markdown document; when LaTeX commands appear in a .qmd file; when a document fails to render to Word or Typst; or when citations/cross-references do not appear in non-LaTeX output.
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Query the Ensembl REST API for regulatory feature annotations, variant effect prediction (VEP), coordinate liftover, gene lookups, and cross-references. Use when the user needs to annotate variants with VEP (consequence, CADD, REVEL, SpliceAI), check Ensembl Regulatory Build overlap for ENCODE regions, convert coordinates between GRCh37 and GRCh38, resolve gene IDs (Ensembl ↔ symbol ↔ RefSeq), look up gene phenotype associations, or cross-reference ENCODE targets with Ensembl annotations. Also use when the user mentions Ensembl, VEP, variant effect predictor, liftover, assembly conversion, regulatory build, gene lookup, or cross-references between databases.
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Repair and verify cross-references between SKILL.md files after a skill is created, renamed, removed, or restructured. Ensures every skill that calls another skill references the correct name, and every skill that is called has accurate "Called by" context. Load after universal-skill-creator creates a skill, after improve-skills completes a cycle, after a skill is renamed or removed, or when the user asks to fix cross-references, sync skill links, repair broken skill references, update skill cross-links, check skill references, or "are cross-links correct".
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Turn local Claude Code session history into a personal activity report, cross-checked with local Git history. Generate Markdown and standalone HTML showing project activity, touched files, related commits, and each project's share of compute usage.
Inspect compiled programs in Binary Ninja using strings, function references, and intermediate representations—views of program logic at different levels. Trace data flow and report findings with addresses, supporting evidence, confidence, and reproduction steps.
Turn documents into a growing Markdown wiki and a knowledge graph, a map of entities and their relationships. Preserve source text, update linked pages as new material arrives, and answer questions with supporting evidence.
Prepare for an upcoming workday by combining Outlook meetings with open tasks and workspace context. Generate an HTML briefing with meeting preparation, scheduling conflicts, suggested priorities, and available time for learning and focused work.
Compare C# Web API source code with its TypeScript or JavaScript clients to find mismatched data fields, required inputs, and response handling. Receive an audit report showing client impact, severity, and confidence in each match.
Create academic Word documents with APA, Chicago, IEEE, or MLA citation formatting. Organize abstracts, equations, figure and table references, footnotes, and bibliographies, with support for two-column journal layouts in a single .docx file.
Research prospective companies and contacts, check existing customer records, and assess fit against your ideal customer profile. Receive a sourced brief covering recent developments, likely priorities, outreach talking points, and a suggested next step.
Restructure raw article text stored in gbrain into summaries, exact quotes, key insights, and links to related pages. Preserve the original text and connect the article's significance to projects and interests already recorded in gbrain.
Prepare a personal knowledge base for team sharing by removing compensation, performance assessments, personal details, and other sensitive content. The skill checks pages and searchable records, verifies the cleaned material, and addresses sensitive Git history with explicit confirmation.
Move notes and structured data from Obsidian, Notion, and other supported sources into GBrain. Preserve the originals, map fields and cross-references, and check imported pages, links, and content after migration.
Write a game design document for one system, such as combat, crafting, or dialogue. Work through sections with specialist agent input, check dependencies against existing designs, and save approved sections with progress records for later continuation.
Find recurring questions in resolved Plain support tickets that existing knowledge articles do not cover. Draft articles from actual resolutions, avoid previously drafted topics, and open a pull request for human review.
Draft contracts, legal memos, court documents, and policies in Word format. Build each section with checks for defined terms, references, and citations, using CourtListener and eCFR research tools when case law or regulations are needed.