34 skills · sorted by relevance
Build reproducible empirical analyses in R, from data cleaning to statistical modeling and publication tables and figures. Covers economics, epidemiology, and machine learning approaches to causal inference, which estimates effects of interventions.
Build publication-quality figures in R with ggplot2 using the grammar of graphics (data + aesthetics + geometries + scales + facets + themes) with CVD-safe palettes, cairo_pdf TrueType embedding, programmatic aes via tidy evaluation, and the theme_classic publication baseline. Use when producing static figures in R for papers, presentations, or reports.
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R visual creation and ggplot2 patterns for PBIR reports. Automatically invoke when the user mentions "R visual", "ggplot2", "ggplot in Power BI", or asks to "create an R visual", "add an R chart", "write an R visual script", "inject an R script into Power BI".
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使用R语言ggplot2绘制基因表达差异点图，支持pvalue大小映射、log2FoldChange颜色渐变及特定主题样式定制。
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Generate jigsaw puzzles via generate_puzzle() or geom_puzzle_*() with parameter validation against inst/config.yml. Supports rectangular, hexagonal, concentric, voronoi, and snic puzzle types with configurable grid, size, seed, offset, and layout parameters. Use when creating puzzle SVG files for a specific type and configuration, testing generation with different parameters, generating sample output for documentation or demos, or creating ggplot2 puzzle visualizations.
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Create R-based pictogram glyphs for skill, agent, or team icons in the visualization layer. Covers concept sketching, ggplot2 layer composition using the primitives library, color strategy, registration in the appropriate glyph mapping file and manifest, rendering via the build pipeline, and visual verification of the neon-glow output. Use when a new entity has been added and needs a visual icon for the force-graph visualization, an existing glyph needs replacement, or when batch-creating glyphs for a new domain.
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Build publication-quality figures in R with ggplot2 using the grammar of graphics (data + aesthetics + geometries + scales + facets + themes) with CVD-safe palettes, cairo_pdf TrueType embedding, programmatic aes via tidy evaluation, and the theme_classic publication baseline. Use when producing static figures in R for papers, presentations, or reports.
The English summary is being prepared. Showing the original description.
Build publication-quality figures in R with ggplot2 using the grammar of graphics (data + aesthetics + geometries + scales + facets + themes) with CVD-safe palettes, cairo_pdf TrueType embedding, programmatic aes via tidy evaluation, and the theme_classic publication baseline. Use when producing static figures in R for papers, presentations, or reports.
The English summary is being prepared. Showing the original description.
Build publication-quality figures in R with ggplot2 using the grammar of graphics (data + aesthetics + geometries + scales + facets + themes) with CVD-safe palettes, cairo_pdf TrueType embedding, programmatic aes via tidy evaluation, and the theme_classic publication baseline. Use when producing static figures in R for papers, presentations, or reports.
The English summary is being prepared. Showing the original description.
Build publication-quality figures in R with ggplot2 using the grammar of graphics (data + aesthetics + geometries + scales + facets + themes) with CVD-safe palettes, cairo_pdf TrueType embedding, programmatic aes via tidy evaluation, and the theme_classic publication baseline. Use when producing static figures in R for papers, presentations, or reports.
The English summary is being prepared. Showing the original description.
使用R语言ggplot2绘制基因表达差异点图，支持pvalue大小映射、log2FoldChange颜色渐变及特定主题样式定制。
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Create clear, accurate charts for dashboards, data exploration, and reports. Choose chart types that fit the message, refine labels and scales, use accessible colors, and add context and annotations to help readers understand the findings.
Manage Python and R packages for notebook work. Resolve missing-package errors, check installed versions, install into the selected runtime, and restart the kernel when needed, with guidance on using separate environments for different dependency requirements.
Analyze datasets in R or Python, from exploring distributions and missing values to fitting regressions. Produce tables and figures for publication, save scripts and model results, and review the analysis for common problems.
Analyze changes before and after an intervention in R, estimate how effects develop over time, and plot results. Choose methods suited to different adoption dates and check assumptions behind comparisons between treated and untreated groups.
Generate code for economics paper figures, including event studies that show effects over time and coefficient comparisons. Adjust fonts, colors, dimensions, and export settings, with consistent file naming for use in manuscripts.
Creates DE-specific diagnostic and result visualizations using DESeq2/edgeR built-in functions and lightweight ggplot2 wrappers. Covers MA plot (with the shrunken-LFC compression effect), volcano (with the apeglm caveat that p-values are unchanged), PCA on VST/rlog (never raw counts), sample distance heatmaps, top-DE-gene heatmaps with the row-scaling trap, dispersion / BCV plot interpretation, p-value histogram diagnostics, plotCounts for individual genes, blind=TRUE vs FALSE rationale, and the n=3 visualization stake. Use when generating DE diagnostic plots, choosing VST vs rlog for visualization, troubleshooting suspicious plot patterns (shifted MA cloud, batch-dominated PCA, anti-conservative p-value histogram), or building a standard QC figure panel.
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Build UpSet plots to visualize set intersections beyond 4 sets (where Venn fails) using ComplexUpset (modern, ggplot2-grammar) or the unmaintained UpSetR, with explicit cardinality vs degree sorting, attribute panels, and query highlighting. Use when comparing overlap across many gene sets, peak sets, variant lists, or any set membership matrix where Venn diagrams become illegible.
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Build volcano and MA plots from differential-expression / association results with LFC shrinkage, FDR-adjusted thresholds, sensible label placement, and axis-truncation conventions. Covers EnhancedVolcano, ggplot2, matplotlib, and the apeglm/ashr/normal shrinkage decision. Use when visualizing differential-expression results (RNA-seq, ChIP-seq, ATAC-seq, proteomics) or any per-feature effect-size + p-value table.
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Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <d
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'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.
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Audit, redesign, generate, and improve IEEE manuscript figures, tables, captions, result presentation, plotting scripts, visual polish, hybrid Python/R plus vector-editor workflows, publication-ready matplotlib house style, and layout using routed visual-evidence checks. Use when checking or creating plot readability, axes, legends, line overlap, table structure, metric reporting, captions, grayscale accessibility, IEEE one-column/two-column layout, figure/table placement, claim-evidence mapping, reviewer first-impression risks, matplotlib/seaborn or ggplot2 figure code, SVG/PDF/TIFF/PNG export, Illustrator/Inkscape/PowerPoint/Figma finishing plans, or IEEE-style engineering evidence graphics.
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Use when 用户请求选择、创建、改进或统一数据可视化，并需按数据与意图选择图表、主题及 D3.js、ECharts、Mapbox、Three.js、Matplotlib、Plotly 或 ggplot2 技术栈。
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Improve an existing R-based pictogram glyph for the visualization layer. Covers visual audit of the current glyph, diagnosis of specific issues (proportions, readability, glow balance), targeted modifications to the glyph function, re-rendering, and before/after comparison. Works for skill, agent, and team glyphs. Use when a glyph renders poorly at small sizes, its visual metaphor is unclear, it has proportion issues, the neon glow effect is unbalanced, or after adding new palettes or changing the rendering pipeline.
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