Results for “rocker”

Create a Dockerfile for R projects using rocker base images. Covers system dependency installation, R package installation, renv integration, and optimized layer ordering for fast rebuilds. Use when containerizing an R application or analysis, creating reproducible R environments, deploying R-based services (Shiny, Plumber, MCP server), or setting up consistent development environments across machines.

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Python library for single-particle tracking (SPT) in video microscopy via the Crocker-Grier algorithm. Locate particles (fluorescent spots, colloids, vesicles, cells) per frame, link into trajectories, filter short tracks, and compute MSD for diffusion analysis. 2D/3D with subpixel accuracy; reads TIF stacks, AVI, image series via pims. Use for quantitative SPT and diffusion coefficient extraction from fluorescence or brightfield video.

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