Results for “scaffold”

Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence). Covers Hi-C/Omni-C scaffolding (YaHS, SALSA2, 3D-DNA/Juicer), Hi-C read-mapping prerequisites (map each end separately, no mate rescue, dedup, enzyme-aware), reading the contact map for misjoins/inversions/false-duplications, manual curation in Juicebox/PretextView (the VGP/DToL standard), reference-guided scaffolding (RagTag) and its karyotype-erasure hazard, genetic-map (ALLMAPS) and Bionano optical-map integration, chimera-breaking before scaffolding, gap-filling, and telomere/contig-vs-scaffold-N50 QC (tidk). Use when turning contigs into chromosomes with Hi-C, integrating a linkage map or optical map, choosing a scaffolder by available linking data, or judging whether a chromosome-scale assembly is trustworthy.

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Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence). Covers Hi-C/Omni-C scaffolding (YaHS, SALSA2, 3D-DNA/Juicer), Hi-C read-mapping prerequisites (map each end separately, no mate rescue, dedup, enzyme-aware), reading the contact map for misjoins/inversions/false-duplications, manual curation in Juicebox/PretextView (the VGP/DToL standard), reference-guided scaffolding (RagTag) and its karyotype-erasure hazard, genetic-map (ALLMAPS) and Bionano optical-map integration, chimera-breaking before scaffolding, gap-filling, and telomere/contig-vs-scaffold-N50 QC (tidk). Use when turning contigs into chromosomes with Hi-C, integrating a linkage map or optical map, choosing a scaffolder by available linking data, or judging whether a chromosome-scale assembly is trustworthy.

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Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence). Covers Hi-C/Omni-C scaffolding (YaHS, SALSA2, 3D-DNA/Juicer), Hi-C read-mapping prerequisites (map each end separately, no mate rescue, dedup, enzyme-aware), reading the contact map for misjoins/inversions/false-duplications, manual curation in Juicebox/PretextView (the VGP/DToL standard), reference-guided scaffolding (RagTag) and its karyotype-erasure hazard, genetic-map (ALLMAPS) and Bionano optical-map integration, chimera-breaking before scaffolding, gap-filling, and telomere/contig-vs-scaffold-N50 QC (tidk). Use when turning contigs into chromosomes with Hi-C, integrating a linkage map or optical map, choosing a scaffolder by available linking data, or judging whether a chromosome-scale assembly is trustworthy.

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Scaffold a standalone RTVI CV microservice that plugs into VSS Search and Alerts profiles via Kafka mdx-raw. The shipped scaffold script is a YOLO26 reference implementation (ONNX, labels, custom parser required). Use when building a new perception microservice repo, validating the VSS integration contract, extending that scaffold for segmentation frame-mask payloads, or scaffolding with placeholders before customer YOLO26 assets exist. For swapping the detector in the stock vss-rt-cv container, use rtvi-cv-customize-model instead. Live DeepStream integration cannot run until the customer-supplied ONNX, labels file, and parser library exist.

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Analyzes chemical libraries by scaffold using Bemis-Murcko scaffolds, generic frameworks, cyclic skeletons, matched molecular pair (MMP) analysis via mmpdb, R-group decomposition, Free-Wilson analysis, scaffold hopping, and chemotype-aware ML train/test splits. Use when identifying chemotype clusters in a library, deriving SAR transformation rules, decomposing series into R-groups, performing scaffold-balanced QSAR splits, or planning analog campaigns.

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Analyzes chemical libraries by scaffold using Bemis-Murcko scaffolds, generic frameworks, cyclic skeletons, matched molecular pair (MMP) analysis via mmpdb, R-group decomposition, Free-Wilson analysis, scaffold hopping, and chemotype-aware ML train/test splits. Use when identifying chemotype clusters in a library, deriving SAR transformation rules, decomposing series into R-groups, performing scaffold-balanced QSAR splits, or planning analog campaigns.

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Analyzes chemical libraries by scaffold using Bemis-Murcko scaffolds, generic frameworks, cyclic skeletons, matched molecular pair (MMP) analysis via mmpdb, R-group decomposition, Free-Wilson analysis, scaffold hopping, and chemotype-aware ML train/test splits. Use when identifying chemotype clusters in a library, deriving SAR transformation rules, decomposing series into R-groups, performing scaffold-balanced QSAR splits, or planning analog campaigns.

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Analyzes chemical libraries by scaffold using Bemis-Murcko scaffolds, generic frameworks, cyclic skeletons, matched molecular pair (MMP) analysis via mmpdb, R-group decomposition, Free-Wilson analysis, scaffold hopping, and chemotype-aware ML train/test splits. Use when identifying chemotype clusters in a library, deriving SAR transformation rules, decomposing series into R-groups, performing scaffold-balanced QSAR splits, or planning analog campaigns.

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Turn a design or requirements document into a working MVP, a minimal product, through small end-to-end feature slices. It coordinates scaffolding, repeated generation and evaluation, reviews, and approval gates, with separate commits for the scaffold and each slice.

• Building a working MVP from a design document
• Planning small end-to-end feature slices
• Scaffolding the first working feature

Build and troubleshoot ChatGPT apps with an MCP server that exposes tools and an optional interactive widget. Use current official documentation and examples to create scaffolds, configure security settings, and guide local validation and deployment when requested.

• Create a ChatGPT app scaffold from an official example
• Design tools and connect an MCP server to a widget
• Refactor or troubleshoot an existing Apps SDK app

Build, refactor, and troubleshoot ChatGPT apps with an MCP server, which exposes tools to the assistant, and an interactive widget. Use official documentation and examples to plan tools, scaffold code, configure security settings, and validate local operation.

• Scaffolding a ChatGPT app with a server and widget
• Planning app tools and their inputs
• Refactoring an existing Apps SDK demo

This skill should be used when the user wants to "create an agent project", "start a new ADK project", "build me a new agent", "add CI/CD to my project", "add deployment", "enhance my project", or "upgrade my project". Part of the agents-cli skills suite. Covers `agents-cli scaffold create`, `scaffold enhance`, and `scaffold upgrade` commands, template options, deployment targets, and the prototype-first workflow. Do NOT use for writing agent code (ADK projects: use google-agents-cli-adk-code) or deployment operations (use google-agents-cli-deploy).

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Generate or scaffold ASP.NET Core code — Razor Pages, Blazor components, MVC controllers, views, and Minimal API endpoints — without using ASP.NET Core CLI scaffolding/code-generation tools. Use when (1) adding CRUD pages, views, or API endpoints backed by Entity Framework (EF Core) and a database, (2) generating code to create, read, update, and delete data using a DbContext, (3) scaffolding UI components that match the project's existing CSS framework and coding patterns, or (4) creating data-driven forms, tables, and navigation for a model class. Do not use for non-ASP.NET projects or when CLI-based scaffolding is preferred.

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Generate or scaffold ASP.NET Core code — Razor Pages, Blazor components, MVC controllers, views, and Minimal API endpoints — without using ASP.NET Core CLI scaffolding/code-generation tools. Use when (1) adding CRUD pages, views, or API endpoints backed by Entity Framework (EF Core) and a database, (2) generating code to create, read, update, and delete data using a DbContext, (3) scaffolding UI components that match the project's existing CSS framework and coding patterns, or (4) creating data-driven forms, tables, and navigation for a model class. Do not use for non-ASP.NET projects or when CLI-based scaffolding is preferred.

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Scaffold or standardize a production-ready repository structure with specs, source layout, tests, CI, agent context, config examples, release notes, and operational docs. Use when starting a new repo, turning a prototype into a maintainable project, adding missing repository foundations, or creating a repo skeleton before implementation. For AGENTS.md-only context scaffolding, use agentsmd-scaffold.

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Greenfield project architecture + harness scaffolding for AI Agent productivity. Interview-driven decisions → requirements.md → execute. Produces: Code Structure (vertical slice exemplar), Test Infrastructure, Guard Rails, conditional extensions, AND Harness (CLAUDE.md with domain/team context, rules, skills, hooks). L2: architecture decisions, L3: harness setup, L4: requirements + harness decisions (tasks generated later by /execute into plan.json). Use when: "/scaffold", "scaffold", "new project", "set up project", "프로젝트 세팅", "초기 구조"

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Use when a course needs numbered problem, solution, and explainer scaffolds. Not for a CLI or Next.js project scaffold: use scaffold-nextjs.

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Built by DynG AI for PlatformPilot.ai-style Go agent runtimes. Use when the user wants to scaffold HandoffKit runtime primitives into a Go project: channel-backed mailboxes, select, router, broker, join/quorum barriers, trace, budget, corpus/compactor, supervisor/nursery, dead letters, and sketch interfaces. Trigger words include PlatformPilot scaffold, scaffold handoffkit, add the HandoffKit runtime, set up message-passing agents, or drop in CSP agent primitives.

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Set up the prerequisites for the Quarkus + LangChain4j agentic stack in the coding agent you are running — detect and (with approval) install the toolchain, register the Quarkus Agents MCP and context7 MCP servers, and write the conventions file into your project. User-invoked only, via /setup-agentic-scaffolding; it prepares the environment the /scaffold-project and /audit-project skills depend on.

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Claude Code（.claude）と Codex（.codex / .agents / AGENTS.md）に分裂したエージェント設定を、 実ファイル1つ + symlink と双方向変換で単一化・同期するスキル。 実ファイルをどちら側に置くか（symlink の向き）は共通設定 source で選べる。 プロジェクト単位の導入ウィザード、既に分裂しているリポジトリを危険度の低い順に解決する手順、 片方しか無いリポジトリへもう片方を生成する scaffold、書き換え前のバックアップと復元、常駐の管理を含む。 「エージェント設定を同期して」「.codex と .claude がずれている」「Codex でも同じスキルを使いたい」 「AGENTS.md と CLAUDE.md を一本化したい」「MCP を Codex でも使えるようにして」 「サブエージェントを Codex 側にも作って」「設定の分裂を解消して」「元に戻して」 「agents-sync」「同期デーモン」などと言われたら使う。 Keywords: agents-sync, エージェント設定同期, .claude, .codex, .agents, AGENTS.md, symlink 統合, symlink の向き, 実ファイルを置く側, 双方向同期, scaffold, 分裂解消, MCP 同期, hooks 同期, サブエージェント同期, バックアップ, 復元, fswatch, launchd, 常駐デーモン

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Create external Paperclip plugins using command-line tools. Scaffold a package, install it into a local Paperclip instance, rebuild as you edit, and check types, tests, and builds before reporting the plugin’s status.

• Scaffold a new external Paperclip plugin
• Install and iterate on a local plugin
• Verify plugin types, tests, and builds

Set up and troubleshoot disposable runtime environments that Orca creates for each workspace. Review recipe settings in orca.yaml, scaffold scripts that create and dispose of environments, and investigate failures reported by the recipe diagnostic command.

• Setting up a new environment recipe from start to finish
• Reviewing environmentRecipes settings in orca.yaml
• Scaffolding provider lifecycle scripts

Assess a repository's readiness for an AI agent execution framework across five dimensions. Produce JSON or a table with readiness scores, estimated cost per run, and scaffold status, without changing repository files.

• Assessing readiness before adopting an agent execution framework
• Comparing readiness scores across five dimensions
• Checking estimated run costs and scaffold readiness

Create TypeScript scaffolding for a domain aggregate, a group of objects governed by shared business rules. Generate its main entity, value objects, repository interface, domain events, and unit test stubs inside an existing context.

• Adding an aggregate to an existing domain context
• Modeling a business concept with rules to enforce
• Creating entity, repository, event, and test scaffolding