Results for “scaffolding”

Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence). Covers Hi-C/Omni-C scaffolding (YaHS, SALSA2, 3D-DNA/Juicer), Hi-C read-mapping prerequisites (map each end separately, no mate rescue, dedup, enzyme-aware), reading the contact map for misjoins/inversions/false-duplications, manual curation in Juicebox/PretextView (the VGP/DToL standard), reference-guided scaffolding (RagTag) and its karyotype-erasure hazard, genetic-map (ALLMAPS) and Bionano optical-map integration, chimera-breaking before scaffolding, gap-filling, and telomere/contig-vs-scaffold-N50 QC (tidk). Use when turning contigs into chromosomes with Hi-C, integrating a linkage map or optical map, choosing a scaffolder by available linking data, or judging whether a chromosome-scale assembly is trustworthy.

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Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence). Covers Hi-C/Omni-C scaffolding (YaHS, SALSA2, 3D-DNA/Juicer), Hi-C read-mapping prerequisites (map each end separately, no mate rescue, dedup, enzyme-aware), reading the contact map for misjoins/inversions/false-duplications, manual curation in Juicebox/PretextView (the VGP/DToL standard), reference-guided scaffolding (RagTag) and its karyotype-erasure hazard, genetic-map (ALLMAPS) and Bionano optical-map integration, chimera-breaking before scaffolding, gap-filling, and telomere/contig-vs-scaffold-N50 QC (tidk). Use when turning contigs into chromosomes with Hi-C, integrating a linkage map or optical map, choosing a scaffolder by available linking data, or judging whether a chromosome-scale assembly is trustworthy.

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Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence). Covers Hi-C/Omni-C scaffolding (YaHS, SALSA2, 3D-DNA/Juicer), Hi-C read-mapping prerequisites (map each end separately, no mate rescue, dedup, enzyme-aware), reading the contact map for misjoins/inversions/false-duplications, manual curation in Juicebox/PretextView (the VGP/DToL standard), reference-guided scaffolding (RagTag) and its karyotype-erasure hazard, genetic-map (ALLMAPS) and Bionano optical-map integration, chimera-breaking before scaffolding, gap-filling, and telomere/contig-vs-scaffold-N50 QC (tidk). Use when turning contigs into chromosomes with Hi-C, integrating a linkage map or optical map, choosing a scaffolder by available linking data, or judging whether a chromosome-scale assembly is trustworthy.

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Generate or scaffold ASP.NET Core code — Razor Pages, Blazor components, MVC controllers, views, and Minimal API endpoints — without using ASP.NET Core CLI scaffolding/code-generation tools. Use when (1) adding CRUD pages, views, or API endpoints backed by Entity Framework (EF Core) and a database, (2) generating code to create, read, update, and delete data using a DbContext, (3) scaffolding UI components that match the project's existing CSS framework and coding patterns, or (4) creating data-driven forms, tables, and navigation for a model class. Do not use for non-ASP.NET projects or when CLI-based scaffolding is preferred.

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Generate or scaffold ASP.NET Core code — Razor Pages, Blazor components, MVC controllers, views, and Minimal API endpoints — without using ASP.NET Core CLI scaffolding/code-generation tools. Use when (1) adding CRUD pages, views, or API endpoints backed by Entity Framework (EF Core) and a database, (2) generating code to create, read, update, and delete data using a DbContext, (3) scaffolding UI components that match the project's existing CSS framework and coding patterns, or (4) creating data-driven forms, tables, and navigation for a model class. Do not use for non-ASP.NET projects or when CLI-based scaffolding is preferred.

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Vygotsky's Zone of Proximal Development and scaffolding as a working framework for learning support. Covers the ZPD definition, the distinction between independent and assisted performance, the six scaffolding functions (recruitment, reduction in degrees of freedom, direction maintenance, marking critical features, frustration control, demonstration), fading, sociocultural mediation, and the relationship between ZPD and deliberate practice. Use when deciding how much help to give, designing collaborative learning, or assessing a learner's ceiling rather than just their current floor.

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Orchestrates component scaffolding by delegating to component-specific scaffolding skills.

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Set up the prerequisites for the Quarkus + LangChain4j agentic stack in the coding agent you are running — detect and (with approval) install the toolchain, register the Quarkus Agents MCP and context7 MCP servers, and write the conventions file into your project. User-invoked only, via /setup-agentic-scaffolding; it prepares the environment the /scaffold-project and /audit-project skills depend on.

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"Apply constructivist learning theory to design instruction based on active knowledge construction, scaffolding, and the zone of proximal development. Use this skill when the user needs to design learner-centered instruction, apply Vygotsky's ZPD or scaffolding principles, or evaluate learning environments for constructivist alignment — even if they say 'how do people really learn', 'student-centered design', or 'scaffolding for learners'.".

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Turn a design or requirements document into a working MVP, a minimal product, through small end-to-end feature slices. It coordinates scaffolding, repeated generation and evaluation, reviews, and approval gates, with separate commits for the scaffold and each slice.

• Building a working MVP from a design document
• Planning small end-to-end feature slices
• Scaffolding the first working feature

Create TypeScript scaffolding for a domain aggregate, a group of objects governed by shared business rules. Generate its main entity, value objects, repository interface, domain events, and unit test stubs inside an existing context.

• Adding an aggregate to an existing domain context
• Modeling a business concept with rules to enforce
• Creating entity, repository, event, and test scaffolding

Create applications, libraries, and feature scaffolding with Nx generators, tools that produce starter code. It discovers suitable generators, prefers workspace-specific options, checks their behavior, and adjusts and verifies the generated files against existing project conventions.

• Create a library that follows existing workspace conventions
• Scaffold an application, component, or feature
• Discover and run a custom workspace generator

Generate towers, castles, pagodas, and domes in Three.js from adjustable parameters. Create construction animations with a rising reveal, matching solid sections, scaffolding, and stage captions, using reusable geometry instead of imported mesh files.

• Animate the construction of a castle or pagoda
• Create an architectural title sequence
• Generate landmarks from adjustable parameters

Template loading, variable filling, and scaffolding for all GSD artifacts. Manages 22+ templates covering every document type in the GSD system, from PROJECT.md to milestone archives.

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Fullstack development toolkit with project scaffolding for Next.js/FastAPI/MERN/Django stacks and code quality analysis. Use when scaffolding new projects, analyzing codebase quality, or implementing fullstack architecture patterns.

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Track performance across sessions and reduce scaffolding as competence grows. Makes fading visible — the learner knows when scaffolds are removed and why. Use for sustained learning engagement where independence is the goal.

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Analyse text complexity across quantitative, qualitative, and reader-task dimensions with scaffolding recommendations. Use when selecting texts, assessing readability, or planning reading support.

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Provides review-workflow scaffolding for context, evidence, and output. Use at the start of any detailed review to ensure consistent, comparable findings.

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Analyse text complexity across quantitative, qualitative, and reader-task dimensions with scaffolding recommendations. Use when selecting texts, assessing readability, or planning reading support.

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Track performance across sessions and reduce scaffolding as competence grows. Makes fading visible — the learner knows when scaffolds are removed and why. Use for sustained learning engagement where independence is the goal.

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Craft CMS 5 PHP coding standards and conventions. ALWAYS load when writing, editing, reviewing, or discussing any PHP in a Craft plugin or module — even small edits. Also when running ECS, PHPStan, or scaffolding with ddev craft make. Covers: PHPDoc blocks (@author, @since, @throws chains), section headers (=========), class organization, naming conventions (services, queue jobs, records, events, enums), defineRules() and validation, beforePrepare() and addSelect(), MemoizableArray, DateTimeHelper vs Carbon, strict_types/declare(strict_types=1), short nullable notation (?string), typed properties, void returns, control flow (early returns, match over switch), CP Twig template conventions, form macros, translations (Craft::t), ECS/PHPStan config, scaffolding commands, and the verification checklist.

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Runs autonomous multi-hour green-field builds: planner, contract, generator/evaluator loop, scaffolding density per model tier. NOT for scoped tasks (mk:cook); NOT for scaffolding only (mk:bootstrap).

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Use when running an autonomous multi-hour build of a green-field product — orchestrates planner → contract → generator ⇄ evaluator loop with adaptive scaffolding density per model tier. Triggers on /mk:autobuild, "build me a kanban app", "build a retro game maker", "autonomous build", or any green-field product spec. NOT for scoped single-task work (see mk:cook); NOT for initial project scaffolding only (see mk:bootstrap).

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Generate ABP Application.Contracts layer scaffolding (interfaces, DTOs, permissions) from technical design. Enables parallel development by abp-developer and qa-engineer. Use when: (1) backend-architect needs to generate contracts, (2) preparing for parallel implementation workflow, (3) creating API contracts before implementation.

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