67 skills · sorted by relevance
Screen dependency names on npm, PyPI, and crates.io before installation to find lookalikes of legitimate packages. This skill compares spelling patterns and registry metadata, helping review AI-generated lists, lockfile changes, and new dependencies in CI/CD.
Data fetching, caching, and revalidation patterns in Next.js App Router. Covers native fetch caching, ISR/SSG/SSR per-route choice, generateStaticParams, unstable_cache, revalidatePath/revalidateTag, Route Handlers, dynamic vs static rendering. Use this skill to: - Pick the right rendering mode (SSG / ISR / SSR / streaming) per route. - Use native fetch caching options correctly. - Build Route Handlers that match REST conventions. - Invalidate cached data after mutations. - Use generateStaticParams for dynamic SSG. Do NOT use this skill for: - RSC vs Client boundaries (see server-component-patterns). - Routing primitives (see nextjs-routing). - General conventions (see nextjs-conventions).
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Build content-focused websites with Astro, including blogs, documentation, and portfolios. Organize Markdown or MDX content, generate static pages, and add interactive components only where needed, with guidance on routing, shared layouts, and server-rendered pages.
Build Next.js applications with App Router, the app directory routing system. Get guidance on server rendering, data fetching, caching, API endpoints, and deployment settings, including loading states and image optimization for responsive page experiences.
Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score visualizations. NOT for single-cell RNA-seq, absolute cell proportion estimation, or clinical decision making.
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Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. Trigger keywords: GSVA, ssGSEA, pathway enrichment, KEGG pathway analysis, MSigDB. NOT for: gene-level differential expression, single-cell analysis, methylation analysis, clinical diagnosis.
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Assists with building content-driven websites using Astro's island architecture. Use when creating static sites, blogs, documentation, or marketing pages that ship zero JavaScript by default. Trigger words: astro, static site, island architecture, content collections, SSG, hybrid rendering, astro components.
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Expert guide for Svelte 5 (Runes) and SvelteKit 2+ — fine-grained reactivity, server-first architecture, form actions, and SSR/SSG / Panduan ahli Svelte 5 (Runes) dan SvelteKit 2+ — reaktivitas fine-grained, arsitektur server-first, form actions, dan SSR/SSG.
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Use when building content-heavy sites with Astro, deciding between SSG/SSR/hybrid, choosing client directives (idle/visible/load/media), structuring content collections with type-safe schemas, integrating React/Vue/Solid/Svelte components in the same project, or migrating from Next.js for marketing/docs. Triggers: client:idle vs client:load tradeoffs, content collections schema with zod, image optimization via @astrojs/image, view transitions, server islands, MDX layouts. NOT for SPA-style apps that need full interactivity (use Next/Remix), Astro internals/plugin authoring, or non-content sites where islands provide no benefit.
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Use when building content-heavy sites with Astro, deciding between SSG/SSR/hybrid, choosing client directives (idle/visible/load/media), structuring content collections with type-safe schemas, integrating React/Vue/Solid/Svelte components in the same project, or migrating from Next.js for marketing/docs. Triggers: client:idle vs client:load tradeoffs, content collections schema with zod, image optimization via @astrojs/image, view transitions, server islands, MDX layouts. NOT for SPA-style apps that need full interactivity (use Next/Remix), Astro internals/plugin authoring, or non-content sites where islands provide no benefit.
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Find biological pathways and functions enriched in gene lists or ranked gene data. Choose an appropriate statistical method, align gene identifiers, define comparison backgrounds, and turn results into interpretable tables and plots with multiple-testing corrections.
Build Next.js applications with App Router patterns for page structure, data fetching, caching, and progressive page loading. Covers server and browser component responsibilities, route design, Server Actions, and migration from Pages Router.
Build Vue 3 components and reusable logic, manage shared application data with Pinia, and configure Nuxt 3 projects. Supports mobile apps, offline web features, TypeScript checks, component tests, and Vite build optimization.
Build modern full-stack web applications with Next.js (App Router, Server Components, RSC, PPR, SSR, SSG, ISR), Turborepo (monorepo management, task pipelines, remote caching, parallel execution), and RemixIcon (3100+ SVG icons in outlined/filled styles). Use when creating React applications, implementing server-side rendering, setting up monorepos with multiple packages, optimizing build performance and caching strategies, adding icon libraries, managing shared dependencies, or working with TypeScript full-stack projects.
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Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export differential pathway results and a heatmap for two-group comparison.
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Master Next.js 14+ App Router with Server Components, streaming, parallel routes, and advanced data fetching. Use when building Next.js applications, implementing SSR/SSG, or optimizing React Server Components.
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Plot per-group distributions of continuous data using boxplots, violins, beeswarms, quasirandom jitter, and raincloud plots with sample-size honesty (Weissgerber 2015), KDE-bandwidth awareness, and N-aware encoding choices. Use when comparing distributions across a small number of groups — expression per cluster, biomarker per arm, scores per condition — and the bar-of-mean default is misleading.
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Call copy number variants with the GATK best-practices workflows — the somatic CNV pipeline (CollectReadCounts, DenoiseReadCounts with tangent normalization, ModelSegments, CallCopyRatioSegments) and the germline GATK-gCNV pipeline (DetermineGermlineContigPloidy, GermlineCNVCaller cohort/case mode, PostprocessGermlineCNVCalls). Covers panel-of-normals construction, AnnotateIntervals/FilterIntervals, allelic-count integration, and QS-based filtering. Use when integrating CNV calling into a GATK variant pipeline, calling rare germline CNVs from an exome cohort, deciding between the somatic and germline GATK workflows, or diagnosing why tangent normalization removed a real event or why gCNV output has low precision.
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When the user wants to choose or optimize rendering strategy for SEO. Also use when the user mentions "SSR," "SSG," "CSR," "ISR," "static rendering," "dynamic rendering," "server-side rendering," "client-side rendering," "JavaScript rendering," "pre-rendering," "prerender," "content in initial HTML," or "crawler visibility." For crawl issues, use site-crawlability.
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Builds Vue 3 components with Composition API, configures Nuxt 3 SSR/SSG, sets up Pinia stores, scaffolds Quasar/Capacitor mobile apps, and implements PWA features.
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Select and implement SSG, SSR, ISR, Streaming, or Partial Prerendering strategies in Next.js App Router. Use when choosing a rendering mode for a page, configuring generateStaticParams, or enabling PPR.
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Implement Pages Router data fetching with getServerSideProps, getStaticProps, and API routes in Next.js legacy projects. Use when working in a pages/ directory project, adding SSR/SSG data fetching, or creating API routes.
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Meta tag patterns, structured data (JSON-LD), Core Web Vitals optimization, and SSR/SSG strategies for search visibility.
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Guide for maintaining the MassGen model and backend registry. This skill should be used when adding new models, updating model information (release dates, pricing, context windows), or ensuring the registry stays current with provider releases. Covers both the capabilities registry and the pricing/token manager.
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