Skip to content
cccskills
FreePublished on GitHub

academic-pdf-redaction

Redact text from PDF documents for blind review anonymization

The English summary is being prepared. Showing the original description.

See how to install

Files included (1)

  • SKILL.md3.7 KB

SKILL.md (original)

Review the instructions the agent will receive before you install.

PDF Redaction for Blind Review

Redact identifying information from academic papers for blind review.

CRITICAL RULES

  1. PRESERVE References section - Self-citations MUST remain intact
  2. ONLY redact specific text matches - Never redact entire pages/regions
  3. VERIFY output - Check that 80%+ of original text remains

Common Pitfalls to AVOID

# ❌ WRONG - This removes ALL text from the page:
for block in page.get_text("blocks"):
    page.add_redact_annot(fitz.Rect(block[:4]))

# ❌ WRONG - Drawing rectangles over text:
page.draw_rect(fitz.Rect(0, 0, 600, 100), fill=(0,0,0))

# ✅ CORRECT - Only redact specific search matches:
for rect in page.search_for("John Smith"):
    page.add_redact_annot(rect)

Patterns to Redact (Before References Only)

IMPORTANT: Use FULL names/phrases, not partial matches!

  • ✅ "John Smith" (full name)
  • ❌ "Smith" (partial - would incorrectly match "Smith et al." citations in References)
  1. Author names - FULL names only (e.g., "John Smith", not just "Smith")
  2. Affiliations - Universities, companies (e.g., "Duke University")
  3. Email addresses - Pattern: *@*.edu, *@*.com
  4. Venue names - Conference/workshop names (e.g., "ICML 2024", "ICML Workshop")
  5. arXiv identifiers - Pattern: arXiv:XXXX.XXXXX
  6. DOIs - Pattern: 10.XXXX/...
  7. Acknowledgement names - Names in "Acknowledgements" section
  8. Equal contribution footnotes - e.g., "Equal contribution", "* Equal contribution"

PyMuPDF (fitz) - Recommended Approach

import fitz
import os

def redact_with_pymupdf(input_path: str, output_path: str, patterns: list[str]):
    """Redact specific patterns from PDF using PyMuPDF."""
    doc = fitz.open(input_path)
    original_len = sum(len(p.get_text()) for p in doc)

    # Find References page - stop redacting there
    references_page = None
    for i, page in enumerate(doc):
        if "references" in page.get_text().lower():
            references_page = i
            break

    for page_num, page in enumerate(doc):
        if references_page is not None and page_num >= references_page:
            continue  # Skip References section

        for pattern in patterns:
            # ONLY redact exact search matches
            for rect in page.search_for(pattern):
                page.add_redact_annot(rect, fill=(0, 0, 0))
        page.apply_redactions()

    os.makedirs(os.path.dirname(output_path), exist_ok=True)
    doc.save(output_path)
    doc.close()

    # MUST verify after saving
    verify_redaction(input_path, output_path)

REQUIRED: Verification Function

Always run this after ANY redaction to catch errors early:

import fitz

def verify_redaction(original_path, output_path):
    """Verify redaction didn't corrupt the PDF."""
    orig = fitz.open(original_path)
    redc = fitz.open(output_path)

    orig_len = sum(len(p.get_text()) for p in orig)
    redc_len = sum(len(p.get_text()) for p in redc)

    print(f"Original: {len(orig)} pages, {orig_len} chars")
    print(f"Redacted: {len(redc)} pages, {redc_len} chars")
    print(f"Retained: {redc_len/orig_len:.1%}")

    # DEFENSIVE CHECKS - fail fast if something went wrong
    if len(redc) != len(orig):
        raise ValueError(f"Page count changed: {len(orig)} -> {len(redc)}")
    if redc_len < 1000:
        raise ValueError(f"PDF corrupted: only {redc_len} chars remain!")
    if redc_len < orig_len * 0.7:
        raise ValueError(f"Too much removed: kept only {redc_len/orig_len:.0%}")

    orig.close()
    redc.close()
    print("✓ Verification passed")

Reviews

No reviews yet. Tell others what you thought.

Comments

No login needed. Share how it worked for you, ask a question, or note where it did not run.

No comments yet. Be the first to write one.

Comments are published right away. Do not include personal information such as email addresses or phone numbers. Up to 2 URLs.

0 / 1,000 characters

This form is protected by reCAPTCHA, and the Google Privacy Policy and Terms of Service apply.

More skills from this repository

Use this skill when reading sensor data from CSV files, writing simulation results to CSV, processing time-series data with pandas, or handling missing values in datasets.

The English summary is being prepared. Showing the original description.

agentscope-ai/PawBench119Updated Aug 3, 2026

DC power flow analysis for power systems. Use when computing power flows using DC approximation, building susceptance matrices, calculating line flows and loading percentages, or performing sensitivity analysis on transmission networks.

The English summary is being prepared. Showing the original description.

agentscope-ai/PawBench119Updated Aug 3, 2026

A library for building, validating, visualizing, and serializing dialogue graphs. Use this when parsing scripts or creating branching narrative structures.

The English summary is being prepared. Showing the original description.

agentscope-ai/PawBench119Updated Aug 3, 2026

docx

Free

Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of "Word doc", "word document", ".docx", or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a "report", "memo", "letter", "template", or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.

The English summary is being prepared. Showing the original description.

agentscope-ai/PawBench119Updated Aug 3, 2026

Generator economic dispatch and cost optimization for power systems. Use when minimizing generation costs, computing optimal generator setpoints, calculating operating margins, or working with generator cost functions.

The English summary is being prepared. Showing the original description.

agentscope-ai/PawBench119Updated Aug 3, 2026

Design effective excitation signals (step tests) for system identification and parameter estimation in control systems.

The English summary is being prepared. Showing the original description.

agentscope-ai/PawBench119Updated Aug 3, 2026

See all skills by agentscope-ai

Report a problem with this skill