AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
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Configure GitHub secret scanning and push protection, triage secret alerts, and run local pre-commit secret audits. Use when enabling secret scanning, handling blocked pushes, defining custom patterns, or checking a repo for accidental credentials before commit.
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Run score Not tested
See how to installReview the instructions the agent will receive before you install.
Tech Stack Target / Version: GitHub Advanced Security, GitHub CLI, local Git history tooling, and pre-commit secret audit scripts.
Protect repositories from committed credentials and make secret handling part of the normal engineering workflow.
Use symptom -> action triggers: when one matches, apply this skill and verify with the protocol below.
For GitHub-hosted secret scanning:
Use the references when you need the detailed UI or policy steps.
Prefer this order:
Use the bundled helper before commit when you want a fast local scan:
python secret-scanning/scripts/precommit-secret-audit.py --path .
Scan a narrower surface:
python secret-scanning/scripts/precommit-secret-audit.py --path src --path .github
By default the helper skips generated folders and Markdown-heavy docs to reduce false positives. Use --include-docs when you want documentation scanned too.
When an alert exists:
false positive, used in tests, or already revoked.Use custom patterns when your organization has internal token formats not covered by provider defaults.
Guidelines:
Before claiming "skill applied successfully":
.env files, private keys, connection strings, or real tokens in examples.This skill is written to stay usable across GitHub Copilot, Claude Code, and Codex.
$CODEX_HOME/skills/secret-scanning and restart Codex after major changes.Preferred MCP Server: GitHub Advanced Security plugin
SKILL.md, bundled references or scripts, and manual verification. Show the exact commands, evidence, and final checks you used before concluding."secret-scanning/scripts/precommit-secret-audit.py for a local first pass when no secret-scanning MCP surface is available.gh, Git history cleanup, and the GitHub web UI for remediation, bypass review, and alert triage.No reviews yet. Tell others what you thought.
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AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
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Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
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12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, audit my rebuttal, check my response draft, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見, 評估回覆, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견 반영, 답변서 점검, AI 사용 고지.
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Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready manuscript, or (5) systematically execute a planned paper. Triggered by phrases like 'write the paper from this outline,' 'compose the full manuscript,' 'execute the outline,' or when users have completed strategic planning (academic-paper-strategist skill) and are ready to write. Takes optimized outline as input; outputs complete manuscript with iterative quality checks.
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Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy, 審查論文, 論文審查, 模擬審查, 同儕審查, 幫我審這篇, 以審查人角度評估, 審查者校準, 논문 심사, 동료 심사, 모의 심사, 심사자 관점에서 평가, 심사자 보정.
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Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4) prepare for preprint submission, or (5) understand platform requirements and writing standards. Triggered by phrases like 'plan a paper on,' 'help me design a paper about,' 'identify research gaps in,' 'is this idea original,' or when users need structured research planning. The skill guides through three phases: Platform Analysis (identifying target venue and studying sample papers), Theoretical Framework (AI-driven literature search and gap identification), and Outline Optimization (structured design with reviewer-perspective self-assessment). Each phase includes quality evaluation standards and validation checkpoints.
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