Workflow for read alignment, sorting, indexing, mapping statistics, and downstream-ready alignment artifacts.
The English summary is being prepared. Showing the original description.
BioTender-max/awesome-bio-agent-skills204Updated Jul 2, 2026
FreePublished on GitHub
bioskills
Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed.
The English summary is being prepared. Showing the original description.
See how to installFiles included (2)
- SKILL.md3.1 KB
- scripts/install-bioskills.sh4.1 KB
SKILL.md (original)
Review the instructions the agent will receive before you install.
bioSkills Installer
Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis.
Installation
Run the bundled install script to download and install all bioSkills:
bash scripts/install-bioskills.sh
Or install only specific categories:
bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"
What Gets Installed
425 skills across 62 categories covering:
- Sequence & Alignment (40): sequence-io, sequence-manipulation, alignment, alignment-files, database-access
- Read Processing (11): read-qc, read-alignment
- RNA-seq & Expression (14): differential-expression, rna-quantification, expression-matrix
- Single-Cell & Spatial (25): single-cell, spatial-transcriptomics
- Variant Analysis (21): variant-calling, copy-number, phasing-imputation
- Epigenomics (25): chip-seq, atac-seq, methylation-analysis, hi-c-analysis
- Metagenomics & Microbiome (13): metagenomics, microbiome
- Genomics & Assembly (29): genome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design
- Regulatory & Causal (13): gene-regulatory-networks, causal-genomics, rna-structure
- Temporal & Ecological (11): temporal-genomics, ecological-genomics
- Immunology & Clinical (25): immunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics
- Specialized Omics (36): proteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy
- RNA Biology (20): small-rna-seq, epitranscriptomics, clip-seq, ribo-seq
- Phylogenetics & Evolution (16): phylogenetics, population-genetics, comparative-genomics
- Structural & Systems (11): structural-biology, systems-biology
- Screens & Cytometry (22): crispr-screens, flow-cytometry, imaging-mass-cytometry
- Pathway & Integration (14): pathway-analysis, multi-omics-integration, restriction-analysis
- Infrastructure (39): data-visualization, machine-learning, workflow-management, reporting, experimental-design, long-read-sequencing
- Workflows (40): end-to-end pipelines (FASTQ to results)
After Installation
Once installed, skills are automatically triggered based on the task at hand. Example requests:
- "I have RNA-seq counts from treated vs control samples - find the differentially expressed genes"
- "Call variants from this whole genome sequencing BAM file"
- "Cluster my single-cell RNA-seq data and find marker genes"
- "Predict the structure of this protein sequence"
- "Run a metagenomics classification on these shotgun reads"
Source
Reviews
No reviews yet. Tell others what you thought.
Comments
No login needed. Share how it worked for you, ask a question, or note where it did not run.
No comments yet. Be the first to write one.
More skills from this repository
alphafold
FreeValidate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence metrics (pLDDT, pTM, ipTM), (4) Self-consistency validation of designs, (5) Multi-chain complex prediction with AlphaFold-Multimer. For faster single-chain prediction, use esm. For QC thresholds, use protein-qc.
The English summary is being prepared. Showing the original description.
BioTender-max/awesome-bio-agent-skills204Updated Jul 2, 2026
AlphaFold2 / AlphaFold-Multimer structure prediction for validation and confidence scoring. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence metrics (pLDDT, pTM, ipTM), (4) Self-consistency validation of designs, (5) Multi-chain complex prediction with AlphaFold-Multimer. For faster single-chain prediction, use esm2-sequence-scoring. For QC thresholds, use protein-design-qc.
The English summary is being prepared. Showing the original description.
BioTender-max/awesome-bio-agent-skills204Updated Jul 2, 2026
Workflow for event-level and isoform-level splicing analysis with sashimi-ready outputs and splice QC.
The English summary is being prepared. Showing the original description.
BioTender-max/awesome-bio-agent-skills204Updated Jul 2, 2026
atac-seq
FreeATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.
The English summary is being prepared. Showing the original description.
BioTender-max/awesome-bio-agent-skills204Updated Jul 2, 2026
bindcraft
FreeEnd-to-end binder design using BindCraft hallucination. Use this skill when: (1) Designing protein binders with built-in AF2 validation, (2) Running production-quality binder campaigns, (3) Using different design protocols (fast, default, slow), (4) Need joint backbone and sequence optimization, (5) Want high experimental success rate. For backbone-only generation, use rfdiffusion. For QC thresholds, use protein-qc. For tool selection guidance, use binder-design.
The English summary is being prepared. Showing the original description.
BioTender-max/awesome-bio-agent-skills204Updated Jul 2, 2026