Workflow for read alignment, sorting, indexing, mapping statistics, and downstream-ready alignment artifacts.
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BioTender-max/awesome-bio-agent-skills204Updated Jul 2, 2026
FreePublished on GitHub
report-template
Publication-quality PDF report generation using Typst templates. Produces professional scientific reports with colored section bands, styled tables, figure captions, callout boxes, and page headers/footers.
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See how to installFiles included (3)
- SKILL.md2.3 KB
- report_builder.py14.1 KB
- templates/scientific_report.typ5.8 KB
SKILL.md (original)
Review the instructions the agent will receive before you install.
Report Template System
Generate publication-quality PDF reports using the BioClaw Typst template engine.
Quick Start
import sys
sys.path.insert(0, "/home/node/.claude/skills/report-template")
from report_builder import (
ReportBuilder, typst_table, typst_callout, typst_image,
typst_metadata_block, typst_metric_cards, typst_pagebreak,
typst_text, typst_list, typst_bold, typst_italic,
)
report = ReportBuilder(
title="My Analysis Report",
subtitle="Project XYZ",
author="BioClaw",
)
# Add sections with Typst markup
report.add_section("Background", "Description of the project...")
# Add tables
table = typst_table(
["Sample", "Value", "Status"],
[["A", "92.3", "Pass"], ["B", "87.1", "Pass"]],
caption="Summary of results",
)
report.add_section("Results", table)
# Compile to PDF
report.compile("output/report.pdf")
Available Components
Tables
typst_table(headers, rows, caption=None)
Callout Boxes
typst_callout(text, title="Note", kind="note")
# kind: "note" (blue), "warning" (yellow), "success" (green), "danger" (red)
Figures
typst_image(path, caption=None, width="100%")
# path is relative to the output directory
Metadata Blocks
typst_metadata_block([("Key", "Value"), ("Date", "2026-04-15")])
Metric Cards
typst_metric_cards([
{"label": "Samples", "value": "6"},
{"label": "Quality", "value": "A+"},
])
Text Formatting
typst_text("Plain paragraph")
typst_bold("Bold text")
typst_italic("Italic text")
typst_list(["Item 1", "Item 2"])
typst_enum(["Step 1", "Step 2"])
typst_pagebreak()
Template Features
- Dark navy section heading bands with white text
- Teal sub-heading accents
- Professional page headers and footers with page numbers
- Alternating-row table styling
- Four callout box types (note, warning, success, danger)
- Figure numbering and italic captions
- Key-value metadata blocks
- Metric card rows
Requirements
- Python package:
typst(pip install typst) - No system dependencies required
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