Organize manuscript text, figures, and references with version control and repeatable builds. Track how each figure was produced, separate source files from generated outputs, and use automated checks to prepare submission artifacts.
Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.
Review the instructions the agent will receive before you install.
把“写论文”升级成“交付可复现的出版工程”：
适用：
见 templates/repo-structure.md。核心思想：
manuscript/：只放正文与引用（source-of-truth）figures/：每张图一个目录（source + out）build/：所有生成物（可删除，可再生）submission/ 与 revision/：投稿与返修阶段产物figures/fig-02/src/plot.pyfigures/fig-02/out/fig-02.pdf最少要求：
推荐维护：
submission/submission-manifest.yml（统一记录规格与完成度）manubot/rootstock（论文的 CI/协作写作范式）greenelab/deep-review（评审/返修视角）No reviews yet. Tell others what you thought.
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