abinit
FreeGenerate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Diagnose and fix SCF and ionic convergence failures in VASP and ORCA. Covers ALGO, mixing parameters, ISMEAR, NELM, EDIFFG, NSW, and IBRION settings.
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Run score Not tested
See how to installReview the instructions the agent will receive before you install.
Use this skill when:
Always start by checking the convergence history:
catgo_analyze(action: "convergence", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>"
})
This returns SCF energy per iteration and forces per ionic step, making it easy to see whether the problem is electronic or ionic.
| ALGO value | Method | Best for |
|---|---|---|
| Normal | Davidson | Simple semiconductors, insulators |
| Fast | Davidson + RMM-DIIS | Default, most systems |
| All | Davidson + RMM-DIIS (combined) | Difficult metals, surfaces |
| Damped | Damped velocity | Very difficult convergence |
| VeryFast | RMM-DIIS only | Large systems (>500 atoms) |
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "ALGO": "All" }
})
Default values work for most bulk systems. For surfaces, slabs, molecules in vacuum, or magnetic systems, reduce mixing:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: {
"AMIX": 0.1,
"BMIX": 0.01,
"AMIX_MAG": 0.2,
"BMIX_MAG": 0.01
}
})
Lower AMIX = more conservative mixing = slower but more stable convergence.
Default NELM is 60. If the SCF is converging but slowly:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "NELM": 200 }
})
| System type | ISMEAR | SIGMA |
|---|---|---|
| Metal | 1 (Methfessel-Paxton) | 0.2 |
| Semiconductor/insulator | 0 (Gaussian) | 0.05 |
| Molecule in box | 0 (Gaussian) | 0.01 |
| DOS calculation | -5 (tetrahedron) | N/A |
Using ISMEAR=-5 (tetrahedron) for metals with few k-points causes convergence failures. Using ISMEAR=1 for insulators can cause incorrect occupations.
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "ISMEAR": 0, "SIGMA": 0.05 }
})
If a similar calculation has converged, use its WAVECAR as starting point. This is handled automatically by CatGo's workflow engine when chaining tasks.
Add keywords to orca_extra_keywords:
| Problem | Fix keyword | Description |
|---|---|---|
| Slow convergence | SlowConv | Dampened SCF |
| Very slow | VerySlowConv | More conservative |
| Oscillating | SOSCF | Second-order SCF |
| Near-degenerate | SmearTemp 5000 | Fermi smearing |
| Level shifting | Shift 0.3 | Shift virtual orbitals up |
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "orca_extra_keywords": "SlowConv SOSCF" }
})
VASP default EDIFFG=-0.05 eV/A is reasonable. If too tight:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "EDIFFG": -0.03 }
})
Negative EDIFFG = force criterion (recommended). Positive = energy criterion.
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "NSW": 300 }
})
| IBRION | Method | Best for |
|---|---|---|
| 1 | Quasi-Newton (RMM-DIIS) | Near-minimum structures |
| 2 | Conjugate gradient | Far from minimum (default) |
| 3 | Damped MD | Very distorted structures |
If CG (IBRION=2) oscillates, switch to quasi-Newton:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "IBRION": 1 }
})
If atoms jump too far each step:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "POTIM": 0.1 }
})
Default POTIM is 0.5 for IBRION=1/2.
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
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Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
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Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
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Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
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One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
The English summary is being prepared. Showing the original description.