abinit
FreeGenerate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Generate and manage DFTB+ calculations. Use when the user requests DFTB+, tight-binding DFT, SCC-DFTB, or needs fast approximate DFT for large systems or MD.
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Run score Not tested
See how to installReview the instructions the agent will receive before you install.
dftb+ --version)catgo_view(action="get_state")catgo_view(action="get_state")
catgo_workflow_engine(action="create", params={"name": "DFTB+ optimization"})
CatGo does not yet have a native DFTB+ engine. Use task_type: "shell".
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "shell",
"name": "dftb_relax",
"command": "dftb+ > dftb.out 2>&1",
"input_files": {
"dftb_in.hsd": "<HSD input content>",
"geo.gen": "<geometry in GEN format>"
},
"system_name": "MoS2_relax"
})
When a @register_engine("dftbplus") is added, use task_type: "geo_opt" with software: "dftbplus".
Geometry = GenFormat {
<<< geo.gen
}
Driver = {}
Hamiltonian = DFTB {
Scc = Yes
SccTolerance = 1e-5
MaxSccIterations = 200
SlaterKosterFiles = Type2FileNames {
Prefix = "/path/to/skfiles/3ob-3-1/"
Separator = "-"
Suffix = ".skf"
}
MaxAngularMomentum {
Ti = "d"
O = "p"
}
KPointsAndWeights = SupercellFolding {
<k1> 0 0
0 <k2> 0
0 0 <k3>
0.0 0.0 0.0
}
Filling = Fermi {
Temperature [K] = 300
}
}
Options {
WriteDetailedOut = Yes
}
Analysis {
CalculateForces = Yes
}
Replace Driver = {} with:
Driver = ConjugateGradient {
MaxForceComponent = 1e-3 # Ha/Bohr (~0.05 eV/Ang)
MaxSteps = 500
LatticeOpt = No # Yes for bulk cell optimization
}
<natoms> S # S=supercell (periodic), C=cluster
Ti O # Element labels
1 1 0.000 0.000 0.000 # index, type, x, y, z (Angstrom or Bohr)
2 2 1.479 1.479 0.000
0.0 0.0 0.0 # Origin
<a1x> <a1y> <a1z> # Lattice vectors (only for S type)
<a2x> <a2y> <a2z>
<a3x> <a3y> <a3z>
| Parameter | Typical value | Notes |
|---|---|---|
| SccTolerance | 1e-5 | SCC charge convergence; tighten for forces |
| MaxAngularMomentum | Per element | Must match SK files (s/p/d/f) |
| SlaterKosterFiles | 3ob / matsci / mio | Check element coverage at dftb.org |
| MaxForceComponent | 1e-3 Ha/Bohr | ~0.05 eV/Ang; 1e-4 for high accuracy |
| Filling Temperature | 300 K | Electronic smearing; increase for metals |
| Set | Elements | Best for |
|---|---|---|
| 3ob-3-1 | H, C, N, O, S, P, Zn, ... | Organic, biochemistry |
| matsci-0-3 | Si, Ge, C, ... | Semiconductors, materials |
| mio-1-1 | H, C, N, O, S, P | General organic |
| tiorg-0-1 | Ti, C, H, N, O, S | TiO2 + organics |
Dispersion = DftD3 {} for van der Waals systemsSpinPolarisation = Colinear { ... } for magnetic systems; not all SK sets support itNo reviews yet. Tell others what you thought.
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
The English summary is being prepared. Showing the original description.
Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
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Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
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Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
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Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
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One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
The English summary is being prepared. Showing the original description.