abinit
FreeGenerate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Generate and manage Quantum ESPRESSO (pw.x) DFT calculations. Use when the user requests QE, Quantum ESPRESSO, pw.x, or plane-wave pseudopotential calculations outside VASP.
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Run score Not tested
See how to installReview the instructions the agent will receive before you install.
analysis/phonopy/SKILL.md for post-processing)pw.x, pp.x) accessible on HPCcatgo_view(action="get_state")catgo_view(action="get_state")
catgo_workflow_engine(action="create", params={"name": "QE relaxation - TiO2"})
CatGo does not yet have a native QE engine. Use task_type: "shell" with input file generation.
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "shell",
"name": "qe_relax",
"command": "pw.x -in relax.in > relax.out",
"input_files": {
"relax.in": "<pw.x input content>"
},
"system_name": "TiO2_relax"
})
When a @register_engine("qe") is added to CatGo, use task_type: "geo_opt" with software: "qe" instead.
catgo_workflow_engine(action="submit", params={"workflow_id": "wf_xxx"})
&CONTROL
calculation = 'scf'
pseudo_dir = './pseudo/'
outdir = './tmp/'
tprnfor = .true.
tstress = .true.
/
&SYSTEM
ibrav = 0
nat = <natoms>
ntyp = <ntypes>
ecutwfc = 60.0
ecutrho = 480.0
occupations = 'smearing'
smearing = 'mv'
degauss = 0.02
/
&ELECTRONS
conv_thr = 1.0d-6
mixing_beta = 0.3
/
ATOMIC_SPECIES
<element> <mass> <element>.UPF
CELL_PARAMETERS angstrom
<a1x> <a1y> <a1z>
<a2x> <a2y> <a2z>
<a3x> <a3y> <a3z>
ATOMIC_POSITIONS angstrom
<element> <x> <y> <z>
K_POINTS automatic
<k1> <k2> <k3> 0 0 0
| Parameter | Typical value | Notes |
|---|---|---|
| ecutwfc | 40-80 Ry | Depends on pseudopotential; SSSP suggests per-element values |
| ecutrho | 4-12x ecutwfc | NC: 4x, US: 8-12x |
| conv_thr | 1.0d-6 | SCF convergence; tighten to 1.0d-8 for phonons |
| mixing_beta | 0.3-0.7 | Lower for metals/magnetic systems |
| K_POINTS | auto from cell | ~0.03 A^-1 spacing, Gamma for molecules |
| smearing | 'mv' | Marzari-Vanderbilt cold smearing; use 'gaussian' for insulators |
Add to input for geometry optimization:
&CONTROL
calculation = 'relax' ! ions only
! or 'vc-relax' ! ions + cell
/
&IONS
ion_dynamics = 'bfgs'
/
&CELL ! only for vc-relax
cell_dynamics = 'bfgs'
press = 0.0
/
relax for slabs (fixed cell), vc-relax for bulkif_pos flags (0 = fixed)mixing_beta to 0.1-0.2 and try mixing_mode = 'local-TF'ibrav = 0 with explicit CELL_PARAMETERS to avoid ambiguityassume_isolated = '2D' for 2D correctionsNo reviews yet. Tell others what you thought.
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
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Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
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Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
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Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
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One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
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