abinit
FreeGenerate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Routes troubleshooting requests to vasp_errors, convergence_issues, or workflow_errors sub-skills based on the type of problem.
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Run score Not tested
See how to installReview the instructions the agent will receive before you install.
Use this skill when the user reports a problem with a calculation or workflow. Route to the appropriate sub-skill based on the error type.
Ask the user or check the workflow status:
catgo_workflow_engine(action: "status", params: { workflow_id: "<wf_id>" })
If a specific task failed, get the error details:
catgo_workflow_engine(action: "get_result", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>"
})
| Error signature | Route to |
|---|---|
| VASP error messages (ZBRENT, BRMIX, EDDDAV, etc.) | troubleshooting/vasp_errors |
| SCF not converging, ionic relaxation oscillating | troubleshooting/convergence_issues |
| ORCA SCF/geometry convergence | troubleshooting/convergence_issues |
| CatGo engine errors (REMOTE_ERROR, stuck tasks) | troubleshooting/workflow_errors |
| HPC connection issues (SSH, SFTP) | troubleshooting/workflow_errors |
| POTCAR not found, missing files | troubleshooting/workflow_errors |
| Test/verify cluster config before submitting; POTCAR/pseudopotential/binary/module checks; job "completed" with no output | troubleshooting/cluster_config_test |
Before routing, collect relevant information:
catgo_workflow_engine(action: "status", params: { workflow_id: "<wf_id>" })
For VASP/convergence issues, check the calculation output:
catgo_analyze(action: "convergence", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>"
})
For system-level issues:
catgo_system(action: "status")
catgo_system(action: "errors")
convergence_issuesworkflow_errorsconvergence_issuesDirect to workflow_errors for SSH/connection troubleshooting.
catgo_workflow_engine(action: "status", params: { workflow_id: "<wf_id>" })
catgo_workflow_engine(action: "get_result", params: {
workflow_id: "<wf_id>",
task_id: "<failed_task_id>"
})
catgo_analyze(action: "convergence", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>"
})
catgo_system(action: "status")
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "ALGO": "All", "NELM": 200 }
})
catgo_workflow_engine(action: "retry", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>"
})
Always diagnose before prescribing. Do not blindly suggest parameter changes
without first understanding what went wrong. Use the diagnostic tools
(status, get_result, convergence analysis) to identify the root cause,
then apply targeted fixes.
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
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Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
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Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
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Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
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One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
The English summary is being prepared. Showing the original description.