Skip to content
cccskills
FreePublished on GitHub

vasp-dos

Density of states (DOS) workflow in VASP. Three-step process for accurate total and projected DOS, d-band center analysis.

The English summary is being prepared. Showing the original description.

Hello-QM/catgo-LRG208 stars(GitHub 208 + cccskills 0)

Run score Not tested

See how to install

Files included (1)

  • SKILL.md5.6 KB

SKILL.md (original)

Review the instructions the agent will receive before you install.

VASP Density of States (DOS) Calculation

Compute total and projected density of states. Requires a three-step workflow: geometry optimization, self-consistent single point, and DOS analysis.

Why Three Steps?

  1. geo_opt — relax the structure to equilibrium
  2. single_point — SCF with ISMEAR=-5 (tetrahedron method) and high NEDOS for accurate DOS
  3. dos_analysis — extract d-band center, orbital projections, and plot data

The tetrahedron method (ISMEAR=-5) gives the most accurate DOS but is incompatible with geometry optimization (forces are not well-defined). That is why a separate single point is needed.

Full DOS Workflow

from catgo.workflow import Workflow
from catgo.workflow.builtins import geo_opt, single_point, dos_analysis

wf = Workflow("RuO2 DOS")
struct = wf.add_task("structure_input", structure=structure_json)

# Step 1: Optimize geometry
opt = wf.add_task(geo_opt, structure=struct.output.structure,
                  ISIF=2, system_name="relax")

# Step 2: Single point with DOS settings
sp = wf.add_task(single_point, structure=opt.output.structure,
                 ISMEAR=-5,       # Tetrahedron method with Blochl corrections
                 NEDOS=3001,      # Dense energy grid (default is 301)
                 LORBIT=11,       # Projected DOS per atom and orbital
                 LCHARG=True,     # Write charge density
                 EDIFF=1e-6,      # Tight convergence
                 system_name="DOS")

# Step 3: Analyze DOS
dos = wf.add_task(dos_analysis, data=sp.output.energy,
                  d_band=True, system_name="DOS_analysis")

wf.submit()

MCP Workflow

# Create workflow
catgo_workflow_engine(action="create", params={"name": "DOS calculation"})

# Step 1: Input structure
catgo_workflow_engine(action="add_task", params={
  "workflow_id": "wf_xxx",
  "task_type": "structure_input",
  "structure": "<json>"
})

# Step 2: Geometry optimization
catgo_workflow_engine(action="add_task", params={
  "workflow_id": "wf_xxx",
  "task_type": "geo_opt",
  "software": "vasp",
  "structure": "{{t_001.output.structure}}",
  "system_name": "relax"
})

# Step 3: Single point for DOS
catgo_workflow_engine(action="add_task", params={
  "workflow_id": "wf_xxx",
  "task_type": "single_point",
  "software": "vasp",
  "structure": "{{t_002.output.structure}}",
  "ISMEAR": -5,
  "NEDOS": 3001,
  "LORBIT": 11,
  "LCHARG": true,
  "EDIFF": 1e-6,
  "system_name": "DOS"
})

# Step 4: DOS analysis
catgo_workflow_engine(action="add_task", params={
  "workflow_id": "wf_xxx",
  "task_type": "dos_analysis",
  "data": "{{t_003.output.energy}}",
  "d_band": true,
  "system_name": "DOS_analysis"
})

catgo_workflow_engine(action="submit", params={"workflow_id": "wf_xxx"})

Key DOS Parameters

ParameterValuePurpose
ISMEAR-5Tetrahedron method — accurate DOS integration
NEDOS3001Energy grid points (more = smoother DOS)
LORBIT11Write atom-projected and orbital-projected DOS
EMIN/EMAXautoEnergy range (auto-detected from eigenvalues)
LCHARGTrueWrite CHGCAR for post-processing

ISMEAR=-5 Requirements

  • Requires at least 3 k-points in each periodic direction
  • Do NOT use for Gamma-only calculations (use ISMEAR=0 instead)
  • Do NOT use during geometry optimization (forces are inaccurate)
  • For metals with few k-points, use ISMEAR=1, SIGMA=0.2 and accept slightly noisier DOS

d-Band Center Analysis

The dos_analysis task computes the d-band center for transition metals:

d_band_center = integral(rho_d(E) * E dE) / integral(rho_d(E) dE)

This is valuable for catalysis studies (Norskov d-band model). The analysis automatically identifies transition metal atoms and extracts their d-orbital projected DOS.

Spin-Polarized DOS

For magnetic systems, set ISPIN=2 to get spin-up and spin-down DOS separately:

sp = wf.add_task(single_point, structure=opt.output.structure,
                 ISMEAR=-5, NEDOS=3001, LORBIT=11,
                 ISPIN=2,
                 MAGMOM="4*5.0 8*0.6",  # Initial moments
                 system_name="DOS_spin")

Partial DOS (PDOS) for Specific Atoms

LORBIT=11 writes per-atom projections. The dos_analysis task can extract DOS for specific atoms or orbitals. Common use cases:

  • Surface vs bulk atoms: compare DOS of surface layer vs interior
  • Adsorbate bonding: compare adsorbate p-states with metal d-states
  • Alloying effects: compare d-band of alloy components

Skip Optimization (Pre-Optimized Structure)

If the structure is already optimized, skip step 1:

wf = Workflow("DOS only")
struct = wf.add_task("structure_input", structure=optimized_json)
sp = wf.add_task(single_point, structure=struct.output.structure,
                 ISMEAR=-5, NEDOS=3001, LORBIT=11,
                 system_name="DOS")
wf.submit()

Troubleshooting

ProblemFix
Noisy/spiky DOSIncrease NEDOS (try 5001), use ISMEAR=-5
ISMEAR=-5 errorNeed >= 3 k-points per direction. Increase k-mesh
No d-band centerdos_analysis only computes d-band for transition metals
DOS looks wrongCheck that SCF is converged (EDIFF=1e-6), check ISPIN for magnetic systems
Fermi level misplacedVASP sets E_F automatically; verify with band structure

Output

The single_point task produces raw DOSCAR data. The dos_analysis task produces:

  • output.dos_data — total and projected DOS as plottable arrays
  • d-band center, d-band width, and band gap (if applicable)

Reviews

No reviews yet. Tell others what you thought.

Comments

No login needed. Share how it worked for you, ask a question, or note where it did not run.

No comments yet. Be the first to write one.

Comments are published right away. Do not include personal information such as email addresses or phone numbers. Up to 2 URLs.

0 / 1,000 characters

This form is protected by reCAPTCHA, and the Google Privacy Policy and Terms of Service apply.

More skills from this repository

abinit

Free

Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.

The English summary is being prepared. Showing the original description.

Hello-QM/catgo-LRG208Updated Oct 23, 2026

Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.

The English summary is being prepared. Showing the original description.

Hello-QM/catgo-LRG208Updated Oct 23, 2026

Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.

The English summary is being prepared. Showing the original description.

Hello-QM/catgo-LRG208Updated Oct 23, 2026

Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.

The English summary is being prepared. Showing the original description.

Hello-QM/catgo-LRG208Updated Oct 23, 2026

Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.

The English summary is being prepared. Showing the original description.

Hello-QM/catgo-LRG208Updated Oct 23, 2026

One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....

The English summary is being prepared. Showing the original description.

Hello-QM/catgo-LRG208Updated Oct 23, 2026

See all skills by Hello-QM

Report a problem with this skill