Query Bgee for healthy wild-type gene expression metadata and receive concise summaries. The skill supports lookups that account for relationships between biological terms, keeps requests small, and saves raw results only when requested.
Submit compact Bgee SPARQL requests for healthy wild-type expression metadata and ontology-aware lookup patterns. Use when a user wants concise Bgee summaries; save raw results only on request.
Review the instructions the agent will receive before you install.
scripts/sparql_request.py for all Bgee SPARQL work.SELECT or ASK queries and add LIMIT early.query_path for longer SPARQL documents instead of pasting large inline queries.query or query_pathmethod, params, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path{"query":"ASK {}"}{"query":"SELECT * WHERE { ?s ?p ?o } LIMIT 3","max_items":3}ok, source, a compact summary, and raw_output_path when save_raw=true.ok=false with error.code such as invalid_json, invalid_input, network_error, or invalid_response.echo '{"query":"ASK {}"}' | python scripts/sparql_request.py
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