Search ClinVar and NCBI Variation for genetic variants, or look up records using VCV, RCV, SCV, and RefSNP identifiers. Get concise summaries, check identifier mappings, and save full JSON responses when needed.
Submit compact ClinVar Clinical Tables and NCBI Variation requests for search, VCV, RCV, SCV, and RefSNP lookups. Use when a user wants variant-level summaries or identifier mapping
Review the instructions the agent will receive before you install.
scripts/clinvar_variation.py for all ClinVar and NCBI Variation work.max_items; for action=search, start around max_items=10.vcv, rcv, scv, and refsnp, omit max_items unless you need to trim nested arrays in the summary.... in tool previews as UI truncation, not literal request content.save_raw=true and report the saved file path instead of pasting large payloads into chat.action=search for the Clinical Tables endpoint.action=vcv|rcv|scv|refsnp for NCBI Variation beta objects.actionsearch: termsvcv: vcvrcv: rcvscv: scvrefsnp: refsnpparams, max_items, max_depth, timeout_sec, save_raw, raw_output_pathsearch returns total, identifiers, display_rows, extra_fields, and truncation metadata.vcv|rcv|scv|refsnp return a compact summary and optional top_keys.raw_output_path when save_raw=true.ok=false with error.code and error.message.echo '{"action":"search","terms":"VCV000013080","max_items":10}' | python scripts/clinvar_variation.py
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