Look up ENCODE biosamples and search experiments through its REST API, an interface for requesting data. Produces concise summaries of records and their descriptive metadata, with an option to save the full response.
Submit compact ENCODE REST API requests for object lookups, portal-style search, and metadata retrieval. Use when a user wants concise ENCODE summaries
Review the instructions the agent will receive before you install.
scripts/rest_request.py for all ENCODE API calls.base_url=https://www.encodeproject.org.max_items; portal-style search endpoints are better with limit=10 and max_items=10.Accept: application/json in headers and add format=json in params when needed.... in tool previews as UI truncation, not literal request content.biosamples/<accession>/ and search paths such as search/.save_raw=true and report the saved file path.base_url, pathmethod, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path{"base_url":"https://www.encodeproject.org","path":"biosamples/ENCBS000AAA/","params":{"frame":"object","format":"json"},"headers":{"Accept":"application/json"}}{"base_url":"https://www.encodeproject.org","path":"search/","params":{"type":"Experiment","assay_term_name":"RNA-seq","limit":10,"format":"json"},"record_path":"@graph","headers":{"Accept":"application/json"},"max_items":10}ok, source, path, method, status_code, warnings, and either compact records or a compact summary.raw_output_path when save_raw=true.ok=false with error.code and error.message.echo '{"base_url":"https://www.encodeproject.org","path":"search/","params":{"type":"Experiment","assay_term_name":"RNA-seq","limit":10,"format":"json"},"record_path":"@graph","headers":{"Accept":"application/json"},"max_items":10}' | python scripts/rest_request.py
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