Query EpiGraphDB for trait classifications, related literature, genetic evidence, and gene–drug relationships. Get concise summaries with limited result counts, or save the complete response when you need the underlying data.
Submit compact EpiGraphDB API requests for ontology, literature, MR, gene-drug, and support-path evidence. Use when a user wants concise EpiGraphDB summaries
Review the instructions the agent will receive before you install.
scripts/rest_request.py for all EpiGraphDB API calls.base_url=https://api.epigraphdb.org.max_items=10 for list-style endpoints; use smaller caps for literature-heavy or pairwise endpoints if the response fans out quickly.ping, builds, and meta/api-endpoints.... in tool previews as UI truncation, not literal request content.ontology/gwas-efo, gene/drugs, gene/druggability/ppi, mr, and literature/gwas.save_raw=true and report the saved file path.base_url, pathmethod, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path{"base_url":"https://api.epigraphdb.org","path":"ping"}{"base_url":"https://api.epigraphdb.org","path":"ontology/gwas-efo","params":{"trait":"asthma","score_threshold":0.8,"fuzzy":true},"max_items":10}{"base_url":"https://api.epigraphdb.org","path":"gene/drugs","params":{"gene_name":"IL6R"},"max_items":10}ok, source, path, method, status_code, warnings, and either compact records or a compact summary.raw_output_path when save_raw=true.ok=false with error.code and error.message.echo '{"base_url":"https://api.epigraphdb.org","path":"ontology/gwas-efo","params":{"trait":"asthma","score_threshold":0.8,"fuzzy":true},"max_items":10}' | python scripts/rest_request.py
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