Search HMDB for metabolites, proteins, diseases, or pathways and receive concise Markdown summaries. Keep searches focused on one category, with an option to save the full response when more detail is needed.
Submit compact HMDB search requests for metabolites, proteins, diseases, and pathways. Use when a user wants concise HMDB summaries
Review the instructions the agent will receive before you install.
scripts/rest_request.py for all HMDB calls.base_url=https://hmdb.ca.per_page=10 and max_items=10.... in tool previews as UI truncation, not literal request content.unearth/q with explicit query, category, and format=json.save_raw=true and report the saved file path.base_url, pathmethod, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path{"base_url":"https://hmdb.ca","path":"unearth/q","params":{"query":"serotonin","category":"metabolites","format":"json","per_page":10},"record_path":"metabolites","max_items":10}{"base_url":"https://hmdb.ca","path":"unearth/q","params":{"query":"glycolysis","category":"pathways","format":"json","per_page":10},"max_items":10}ok, source, path, method, status_code, warnings, and either compact records or a compact summary.raw_output_path when save_raw=true.ok=false with error.code and error.message.echo '{"base_url":"https://hmdb.ca","path":"unearth/q","params":{"query":"serotonin","category":"metabolites","format":"json","per_page":10},"record_path":"metabolites","max_items":10}' | python scripts/rest_request.py
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