Look up structure metadata in RCSB PDB, search for entries by keyword, and retrieve sequences in FASTA, a text format for biological sequences. Receive concise summaries or short sequence previews, with raw output available on request.
Submit compact RCSB PDB requests for core metadata, Search API queries, and FASTA downloads. Use when a user wants concise RCSB summaries; save raw JSON or FASTA only on request.
Review the instructions the agent will receive before you install.
scripts/rest_request.py for all RCSB PDB and Search API calls.base_url=https://data.rcsb.org/rest/v1 for core metadata, https://search.rcsb.org/rcsbsearch/v2 for Search API, and https://www.rcsb.org for FASTA downloads.max_items; Search API results are better with query pager rows around 10 and max_items=10.... in tool previews as UI truncation, not literal request content.response_format=text so the script returns a short text_head unless raw output is requested.base_url, pathmethod, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path{"base_url":"https://data.rcsb.org/rest/v1","path":"core/entry/4hhb"}{"base_url":"https://search.rcsb.org/rcsbsearch/v2","path":"query","method":"POST","json_body":{"query":{"type":"terminal","service":"full_text","parameters":{"value":"hemoglobin"}},"return_type":"entry","request_options":{"pager":{"start":0,"rows":10}}},"record_path":"result_set","max_items":10}{"base_url":"https://www.rcsb.org","path":"fasta/entry/4HHB/download","response_format":"text"}ok, source, path, method, status_code, warnings, and either compact records, a compact summary, or text_head.raw_output_path when save_raw=true.ok=false with error.code and error.message.echo '{"base_url":"https://data.rcsb.org/rest/v1","path":"core/entry/4hhb"}' | python scripts/rest_request.py
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