Retrieve concise summaries from Reactome about biological pathways, events, participating molecules, and diagram-related data. Look up specific identifiers, search for relevant entries, or find pathways associated with an entity, and save the full response when needed.
Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Use when a user wants concise Reactome summaries
Review the instructions the agent will receive before you install.
scripts/rest_request.py for all Reactome ContentService calls.base_url=https://reactome.org/ContentService.max_items; list-style pathway membership calls are better with max_items=10.Accept: application/json in headers when requesting JSON.... in tool previews as UI truncation, not literal request content.data/query/<eventId>, data/pathways/low/entity/<identifier>, data/participants/<eventId>, and search endpoints.save_raw=true and report the saved file path.base_url, pathmethod, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path{"base_url":"https://reactome.org/ContentService","path":"data/query/R-HSA-199420","headers":{"Accept":"application/json"}}{"base_url":"https://reactome.org/ContentService","path":"data/pathways/low/entity/P38398","params":{"species":"Homo sapiens"},"headers":{"Accept":"application/json"},"max_items":10}{"base_url":"https://reactome.org/ContentService","path":"data/participants/R-HSA-199420","headers":{"Accept":"application/json"},"max_items":10}ok, source, path, method, status_code, warnings, and either compact records or a compact summary.raw_output_path when save_raw=true.ok=false with error.code and error.message.echo '{"base_url":"https://reactome.org/ContentService","path":"data/query/R-HSA-199420","headers":{"Accept":"application/json"}}' | python scripts/rest_request.py
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