Artificial Life atlas covering open-ended evolution, chemical reaction networks, morphogenesis, self-replication, and programmable chemistry. Use when picking a simulation framework, wiring ALife models into the skill graph, or onboarding contributors to the ALife cluster.
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A single entry point that intermixes every ALife-primary skill in the repo. Edges emitted below make each family member depth-1 from this hub.
Tree decomposition of the ALIFE 2025 theme graph yields 7 bags, tree-width 2.
evolution is the universal adhesion vertex (appears in 6/7 bags).
alife · alife2025 · truealife · true-alife · jaxlife-open-ended · skill-evolution
Comprehensive index: alife (256+ repos). Proceedings: alife2025 (337 pages, 80+ papers).
JAX simulator: jaxlife-open-ended. Self-indexing automata: true-alife.
Skill-level evolution patterns: skill-evolution. Energy tracking: truealife.
catalyst-chemical · chemical-abstract-machine · chemical-organization-theory · crn-topology · turing-chemputer
Catalyst.jl ODE modeling: catalyst-chemical. Berry-Boudol CHAM: chemical-abstract-machine.
Org theory / closure: chemical-organization-theory. Reaction graph topology: crn-topology.
Programmable synthesis (XDL): turing-chemputer.
lindenmayer-systems · phyllotaxis
L-systems for fractal/plant generation: lindenmayer-systems.
Golden-angle succulent growth as propagator network: phyllotaxis.
autopoiesis · social-emergence-protocol
Varela-inspired self-modifying agents: autopoiesis.
Stigmergic bootstrapping of complex social behaviors: social-emergence-protocol.
assembly-index
Cronin's Assembly Theory for molecular complexity and life detection.
protocol-evolution-markets
Prediction markets for protocol standard survival/fork/merge dynamics.
catalyst-chemical models reaction dynamics that alife2025 papers analyze for open-endedness (Bags 1,2 in tree decomposition).lindenmayer-systems + phyllotaxis produce phenotypes that jaxlife-open-ended evaluates for fitness.autopoiesis closure conditions map to chemical-organization-theory organizational closure.assembly-index provides the fitness landscape metric for skill-evolution and protocol-evolution-markets.alife2025 proceedings cover all families above; its 7-theme classification is the canonical reference.autopoiesis bridges via cybernetic self-reference.protocol-evolution-markets uses open game semantics for market dynamics.chemical-organization-theory closure maps to causal state gating.crn-topology and catalyst-chemical model reactions as attributed C-sets.chemical-abstract-machine CHAM rules are interaction net reductions.assembly-index complexity bounds admit formal verification.From the tree decomposition (7 bags, tree-width 2):
| Bag | Vertices | Trit sum | Status |
|---|---|---|---|
| 1 | evolution, emergence, CRN | +1+0-1 = 0 | balanced |
| 2 | evolution, CRN, morphogenesis | +1-1+0 = 0 | balanced |
| 3 | evolution, morphogenesis, self-replication | +1+0-1 = 0 | balanced |
| 4 | evolution, self-replication, complexity | +1-1+0 = 0 | balanced |
| 5 | evolution, complexity, cognition | +1+0-1 = 0 | balanced |
| 6 | evolution, cognition, emergence | +1-1+0 = 0 | balanced |
| 7 | emergence, CRN | +0-1 = -1 | rebalance via hub trit 0 |
Hub trit assignment: 0 (ERGODIC) — coordinator role in the triadic system.
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Model ElevenLabs voice synthesis as an ACSet schema with Unison ability handlers for typed voice operations. Use when integrating ElevenLabs TTS into category-theoretic pipelines, building typed voice synthesis workflows, or managing multi-voice narration with GF(3) conservation.
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Systematic process for analyzing and modernizing legacy applications to comply with the 12-Factor App methodology. Covers code analysis, configuration externalization, dependency management, and container/Kubernetes best practices.
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Gay MCP skill at invocation 26
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Gay MCP skill at invocation 5
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Gay MCP skill at invocation 27
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Gay MCP skill at invocation 3
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