Rebuild the pgvector gold index after source data changes. Invoke manually — replaces each collection, do NOT trigger automatically.
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Run score Not tested
See how to installReview the instructions the agent will receive before you install.
Use when BDPM/ANSM source data has changed, Silver models were updated, or gold.embedding is missing or stale.
Ensure Postgres is running (pgvector/pgvector:pg16):
docker compose up -d
docker compose ps
Ensure Silver is up to date (run if source data changed):
uv run dotenv -f .env run -- dbt run --project-dir dbt --profiles-dir dbt
uv run dotenv -f .env run -- dbt test --project-dir dbt --profiles-dir dbt
Materialize the Gold asset:
uv run dotenv -f .env run -- uv run dagster asset materialize --select gold_embeddings
Verify row counts:
uv run dotenv -f .env run -- python -c "
from sqlalchemy import create_engine, text
from medox.pipeline.config_pipeline import PipelineSettings
engine = create_engine(PipelineSettings().postgres_dsn)
with engine.connect() as conn:
rows = conn.execute(text('SELECT collection, count(*) FROM gold.embedding GROUP BY 1')).fetchall()
print(rows)
"
Smoke-test the agent tools:
uv run dotenv -f .env run -- python -c "
from medox.agent.tools.tool_search_drug import search_drug
from medox.agent.tools.tool_check_interactions import check_interactions
print(search_drug('doliprane'))
print(check_interactions('warfarine', 'ibuprofene'))
"
| Collection | Content | Rebuilt from |
|---|---|---|
idx_bdpm_medicament_v1 | Drug denominations + metadata | silver_bdpm__medicament |
idx_ansm_interaction_v1 | ANSM interaction pairs | silver_ansm__interaction |
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Add a tool function to the Medox agent. Use when creating a tool file, registering it in the API loop, and writing its test.
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Add a new E2E test case to tests/e2e/prompts.yaml for LangSmith evaluation. Use when adding interaction pairs to test, covering new ANSM drug classes, or rebalancing eval coverage.
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Create a git commit with Medox conventions (co-author, conventional type/scope). Invoke manually with /commit — do NOT trigger automatically.
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Audit code changes on the current branch and update docs/ + .claude/rules/ to stay in sync. Run before /pr.
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Run all project linters (ruff, mypy, sqlfluff) and report results. Invoke with /lint.
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Add a new Dagster asset to the pipeline. Use when creating a Bronze, Silver, or Gold layer asset.
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