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cognee-custom-pipelines

Build custom cognee processing by chaining Python tasks, defining data types, and saving results to graph and vector databases. Use it to enrich existing data, inspect run status, and troubleshoot how tasks pass data.

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Use when building your own cognee processing — writing custom tasks, chaining them into a pipeline with run_custom_pipeline or the lightweight run_pipeline (from cognee.pipelines import run_pipeline), storing custom DataPoints with add_data_points, running custom enrichment over the existing graph, checking pipeline run status, or debugging how data flows between tasks (batch_size, data_per_batch, ctx, Drop, enriches).

See how to install

Good for

  • Building custom extraction and processing steps
  • Saving custom data types to graph and vector databases
  • Adding information to an existing graph
  • Debugging task data flow and checking run status

Files included (1)

  • SKILL.md10.0 KB

SKILL.md (original)

Review the instructions the agent will receive before you install.

Custom tasks and pipelines

Everything cognee does runs as a pipeline: an ordered list of tasks, each a plain Python function whose output feeds the next one. remember() is the right tool for ordinary ingestion. Build a pipeline when you need processing cognee does not ship: your own extraction, your own node types, or a post-processing step over the graph.

import cognee
from cognee.modules.pipelines import Task
from cognee.tasks.storage import add_data_points
from cognee.low_level import DataPoint


class Person(DataPoint):
    name: str
    metadata: dict = {"index_fields": ["name"], "identity_fields": ["name"]}


async def extract_people(data_items: list) -> list[Person]:
    people = []
    for item in data_items:  # always a list, see below
        text = item if isinstance(item, str) else ""
        people += [Person(name=n.strip()) for n in text.split(",") if n.strip()]
    return people


result = await cognee.run_custom_pipeline(
    tasks=[
        Task(extract_people, needs_llm=False),
        Task(add_data_points, needs_llm=False),  # store in graph + vector DBs
    ],
    data=["Ada Lovelace, Alan Turing"],
    dataset="people",
)

Use it

Pick the runner

There are three, and two share the name run_pipeline:

RunnerImportUse it for
cognee.run_custom_pipeline(...)cogneeThe normal choice: runs your tasks against a dataset with permissions, a per-dataset lock, run records, and status
Full orchestrator run_pipeline(tasks=..., data=..., datasets=...)cognee.modules.pipelinesWhat run_custom_pipeline and cognify call; yields PipelineRunInfo
Lightweight run_pipeline([...], data=...)from cognee.pipelines import run_pipeline (after import cognee, the attribute cognee.pipelines.run_pipeline is the orchestrator)Quick chains of task() specs with no permissions, locks, run rows, or migrations; returns the last step's outputs

cognee.run_custom_pipeline(tasks, data=None, dataset="main_dataset", user=None, incremental_loading=False, data_per_batch=20, run_in_background=False, pipeline_name="custom_pipeline", data_cache=False, ...) returns {dataset_id: PipelineRunInfo} (the started run when run_in_background=True). With data=None it runs over the dataset's existing documents (Data rows).

Write a task

from cognee.modules.pipelines import Task
from cognee.modules.pipelines.models import PipelineContext
from cognee.modules.pipelines.tasks.task import task_summary
from cognee.pipelines import Drop


@task_summary("Tagged {n} chunk(s)")
async def tag_chunks(chunks: list, ctx: PipelineContext = None, label: str = "x"):
    for chunk in chunks:
        chunk.metadata["label"] = label
    return chunks  # or yield per item; return/yield Drop to discard


tag = Task(tag_chunks, label="reviewed", batch_size=10, needs_llm=False)
  • A task is an async def, a generator, an async generator, or a plain def. Extra Task(fn, *args, **kwargs) arguments are passed after the pipeline data.
  • needs_llm=False on tasks that never call an LLM lets an LLM-free pipeline skip the LLM connection check.
  • ctx (injected by the parameter name ctx) carries user, data_item, dataset, pipeline_run_id, pipeline_name, and extras.
  • task.with_config(batch_size=..., **kwargs) returns a modified copy.

How data flows

  • Each document runs the whole chain on its own with run_custom_pipeline or the orchestrator, and the first task receives it as a one-element list ([data_item]), not the bare item. The lightweight run_pipeline passes data to the first task unchanged.
  • data_per_batch (default 20) is how many documents run at the same time. It is a concurrency limit, not a batch size.
  • batch_size belongs to the consumer. A task's batch_size decides how the previous task's generator output is grouped before it is passed in. Generator tasks always hand over lists; a coroutine or function hands over its single return value.
  • Streaming: each upstream result goes down the chain immediately, so a downstream task can run many times per document.
  • enriches=True: if the task returns None, its input is passed on unchanged (coroutines and functions only, not generators).
  • Drop: returning or yielding it removes that item from the stream.
  • Every DataPoint passing through is stamped automatically with where it came from (source_pipeline, source_task, source_user, …).

Store results

add_data_points(data_points, custom_edges=None, graph_only=False) writes a list of DataPoints to the graph and indexes their index_fields in the vector DB. It returns the same list, so it can sit mid-chain. Give every node type identity_fields so repeated runs merge instead of duplicating (see the cognee-custom-graph-models skill).

Work on the existing graph

cognee.memify, cognee-cli memify, POST /api/v1/memify and improve()'s extraction_tasks / enrichment_tasks are deprecated and removed in the next release. Run a post-processing step over the graph with run_custom_pipeline: the task reads the graph itself, and one placeholder item as data makes the chain run once instead of once per document.

from cognee.infrastructure.databases.graph import get_graph_engine


async def enrich_graph(_items: list):
    graph = await get_graph_engine()  # the dataset's graph inside the pipeline
    nodes, edges = await graph.get_graph_data()
    return [...]  # new DataPoints for add_data_points


await cognee.run_custom_pipeline(
    tasks=[Task(enrich_graph, needs_llm=False), Task(add_data_points, needs_llm=False)],
    data=[{}],
    dataset="people",
)

For cognee's own enrichment (session bridging, feedback weights, conflict review, global context index) call improve().

Check status

status = await cognee.datasets.get_status([dataset_id], pipeline_names=["custom_pipeline"])

Without pipeline_names it reports only cognify_pipeline. It returns {str(dataset_id): PipelineRunStatus} ({str(dataset_id): {pipeline_name: status}} for several pipeline_names): DATASET_PROCESSING_STARTED, _COMPLETED, or _ERRORED (_INITIATED exists only on legacy rows). The value run_custom_pipeline returns per dataset is a PipelineRunInfo instead, whose class names the outcome: PipelineRunCompleted, PipelineRunAlreadyCompleted, PipelineRunErrored, and so on.

Pitfalls

  • Wrong run_pipeline. The one imported via from cognee.pipelines import run_pipeline wants task() specs called (extract(), not extract) and raises TypeError otherwise; the orchestrator in cognee.modules.pipelines wants Task objects and raises WrongTaskTypeError otherwise.
  • run_custom_pipeline accepts only Task objects despite its type hint; string task names are not resolved.
  • Some callables are rejected by Task (ValueError: Unsupported task type): bound methods and functools.partials of a plain (non-generator) sync function, and callable objects (instances with __call__). Generator and async variants, plain functions, and lambdas work. When in doubt, wrap it in a plain def / async def.
  • run_custom_pipeline does not run database migrations. On an existing database, run await cognee.run_migrations() (or any remember() first).
  • Nodes duplicate on every run when a DataPoint has no identity_fields (or Dedup() fields). examples/guides/custom_data_models.py and examples/guides/custom_tasks_and_pipelines.py have this bug; don't copy it.

How it works

run_custom_pipeline → orchestrator run_pipeline (checks write permission, takes the per-dataset lock, records a PipelineRun) → run_tasks (a semaphore of data_per_batch, one chain per document) → run_tasks_base (streams each task's output into the next, batching by the consumer's batch_size, injecting ctx, stamping provenance).

  • Package overview and the runner semantics: cognee/modules/pipelines/__init__.py
  • Task, task(), TaskSpec, BoundTask, @task_summary: cognee/modules/pipelines/tasks/task.py
  • Orchestrator: cognee/modules/pipelines/operations/pipeline.py; execution: run_tasks.py, run_tasks_base.py, run_tasks_data_item.py
  • Lightweight runner: cognee/modules/pipelines/operations/run_pipeline.py, exported from cognee/pipelines/
  • Context: cognee/modules/pipelines/models/PipelineContext.py
  • run_custom_pipeline: cognee/modules/run_custom_pipeline/run_custom_pipeline.py
  • Storage: cognee/tasks/storage/add_data_points.py
  • Index of all shipped tasks: cognee/tasks/README.md

Examples:

  • examples/demos/custom_pipelines/custom_pipeline_single_object_example.py: the best reference. It runs over added documents, does LLM extraction into typed DataPoints, then recalls. Its models declare identity with Dedup() (the Annotated alternative to metadata["identity_fields"]).
  • examples/demos/custom_pipelines/organizational_hierarchy/: low-level run_tasks, no LLM, dedup via identity_fields, status polling.
  • examples/demos/custom_pipelines/custom_cognify_pipeline_example.py: rebuilds add + cognify from the default task list.

Extending it

  • A new shipped task: put it in the cognee/tasks/ subpackage for its stage, export it from that package's __init__.py, follow the template in cognee/tasks/README.md, and add a unit test under cognee/tests/unit/tasks/.
  • Pipeline tests: cognee/tests/unit/modules/pipelines/ (runner semantics, context, provenance, rollback) and cognee/tests/unit/pipelines/ (the lightweight API).

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