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code-intelligence

Code understanding tool selection. Use when exploring architecture, finding definitions, tracing call chains, assessing blast radius of changes, or debugging code paths in the Genesis codebase.

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Code Intelligence Tool Selection

NeedToolExample
Package/module overviewcodebase_navigate MCP (L0→L1→L2)"What packages exist?"
Symbol definition/signatureSerena find_symbol"Where is Router defined?"
Who calls/references XSerena find_referencing_symbols"Who calls _set_output?"
File symbol overviewSerena get_symbols_overview"What's in engine.py?"
What breaks if I change XGitNexus impact"Blast radius of renaming Router"
End-to-end execution flowGitNexus query"How does task submission work?"
Architecture/clustersGitNexus context or clusters resource"What's in the memory package?"
String pattern / non-PythonGrep"Find all TODO comments"
File by nameGlob"Find all *_hook.py files"

Escalation Path

Start cheap, escalate as needed:

  1. codebase_navigate for orientation (always available, fast)
  2. Serena for precise symbol work (LSP-powered, Python-only)
  3. GitNexus for relationships and impact (knowledge graph, needs index)
  4. Grep/Glob for everything else

Availability

  • Serena: Always available. 1-2s init per session.
  • GitNexus: Requires index. Check freshness: .claude/mcp/run-gitnexus status. PostToolUse hook auto-detects staleness after commits.
  • codebase_navigate: Always available (Genesis health MCP).

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