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nature-literature-pipeline

Automate daily literature discovery across multiple academic sources. Score and select relevant papers, read abstracts or full texts, deliver structured digests through messaging platforms, and archive classified notes while removing duplicate records.

OriginalShow the original description

Complete automated literature discovery pipeline: multi-source search → six-dimension scoring → fine reading → formatted delivery → archival. Combines a configurable engine with daily cron-driven application layer. Works with Feishu, Telegram, or any messaging platform.

Works withTelegram

Run score Not tested

See how to install

Good for

  • Receive a daily digest of relevant research papers
  • Rank candidate papers against research priorities
  • Archive literature notes without duplicate records
  • Adjust search keywords and scoring weights for a field

Overview

What it does

Automates a recurring workflow for finding, scoring, reading, summarizing, and archiving research papers. It searches arXiv, OpenAlex, Crossref, and Semantic Scholar, then scores candidates on six dimensions, including topic fit, methods, and applied value. It reads the top papers at the available level, which may be full text, abstract only, or metadata only, and labels that level in the digest. Summaries include methods and key results. When archiving, it removes duplicates using identifiers such as DOI, classifies papers, creates literature notes, and updates an index.

When it helps

Use it to follow research developments daily or build an ongoing collection of papers for a field. You can adjust keywords, scoring weights, classification rules, delivery destination, and archive location.

Example requests

  • “My research area is X, and my keywords are Y. Send the digest to Feishu and save papers in this folder.”
  • “Find 30 papers every day at 08:30 and send me the top five.”

Notes

Daily runs require a cron schedule. Hermes cron runs locally, so the machine must be on when the job runs. The daily workflow writes to raw/; it asks for user approval before changing a wiki or knowledge base. The skill is licensed under MIT.

This overview was written by AI (OpenAI Codex) from the public SKILL.md. Check the original below for the exact behavior.

Document check

AI checked the SKILL.md for operations that need care and for setup requirements. The score comes only from actually running the skill (hands-on test).

SafetyAre sending data, deleting files, and running commands disclosed?
BPartly lackingIt sends digests to messaging targets and writes to `raw/`, but recipient confirmation is not detailed.
Easy setupDoes it need few tools or API keys, and are they documented?
BPartly lackingDaily use requires cron and a running local machine; detailed setup steps are not included.

Not counted in the score. Rated by AI (OpenAI Codex) as of Oct 24, 2026. Treat it as a guide and read the original before installing.

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Files included (12)

  • SKILL.md4.7 KB
  • agents/openai.yaml273 B
  • manifest.yaml1.7 KB
  • README_EN.md2.3 KB
  • README.md2.1 KB
  • references/cron-setup.md2.8 KB
  • references/gap-analysis.md2.4 KB
  • references/note-template.md4.7 KB
  • references/push-format.md3.4 KB
  • references/review-compilation-workflow.md4.5 KB
  • references/scoring-system.md2.4 KB
  • templates/literature-push-template.md4.9 KB

SKILL.md (original)

Review the instructions the agent will receive before you install.

Nature Literature Pipeline

A complete, production-tested automated literature pipeline. Not just "search for papers" — it's a structured engine that scores, classifies, reads, delivers, and archives research papers daily.

What It Does

Cron (daily trigger, e.g. 08:30)
  │
  ├─ ① SEARCH (30 candidates)
  │   arXiv / OpenAlex / Crossref / Semantic Scholar (auto-degradation)
  │
  ├─ ② COARSE FILTER (30 → 5)
  │   Six-dimension scoring: topic match × 35 + methodology × 20
  │   + journal quality × 15 + network relevance × 10
  │   + applied value × 10 + archival value × 10
  │
  ├─ ③ FINE READ (top 5)
  │   Abstract-level or full-text. Source level tagged:
  │   Full-text / Abstract only / Metadata only
  │
  ├─ ④ DELIVER
  │   Formatted digest to Feishu/Telegram/etc.
  │   🏅 rank | title | journal | ⭐ score | 💡 one-liner
  │   🔬 methods | 📊 key results | 🧭 commentary
  │
  └─ ⑤ ARCHIVE
      DOI/arXiv de-dup → classify → write notes → update index

Quick Start

After installing, tell your agent:

My research area is [X], keywords: [Y], deliver to [feishu group name], archive to [path]

The agent will configure keywords, delivery target, and archive path automatically.

Then set up a daily cron job:

Set up a daily literature push at 08:30 Beijing time, 30 candidates, top 5 delivered

Architecture

The skill is organized in two layers:

LayerPurposeFiles
EngineScoring, classification, note templates, gap analysisreferences/scoring-system.md, references/gap-analysis.md, references/note-template.md
ApplicationDaily cron pipeline, delivery formatting, archival workflowreferences/push-format.md, references/cron-setup.md, references/review-compilation-workflow.md

Configuration

All domain-specific content is configurable:

  • Keywords — your research keywords (English + Chinese)
  • Scoring weights — adjust the six dimensions for your field
  • Classification rules — define your own tier system (A-E or custom)
  • Delivery target — Feishu group, Telegram channel, email, etc.
  • Archive path — local vault/wiki directory

A config template is provided in templates/literature-push-template.md.

Built-in Safeguards

  • Score validation: Each dimension capped, total recalculated — no 11/10 allowed
  • Triple de-duplication: DOI / arXiv ID / OpenAlex ID
  • Graceful degradation: Semantic Scholar down → auto-switch to OpenAlex + Crossref + arXiv
  • Read-only archive: Daily pipeline writes to raw/ literature directory only; never modifies wiki/knowledge base without user approval

Related Skills

  • nature-academic-search — ad-hoc literature search (complementary; this skill adds structured daily automation)
  • nature-citation — CNS citation export (for importing pipeline discoveries into manuscripts)
  • zotero — library management (for long-term organization of pipeline outputs)
  • arxiv — arXiv API (used as a search source)

References

ReferencePurpose
references/scoring-system.mdSix-dimension scoring rubric with weights, caps, and evaluation logic
references/gap-analysis.mdMethodology for identifying research gaps through systematic literature survey
references/note-template.mdStandardized literature note format with YAML frontmatter
references/push-format.mdDaily digest message template with field guidelines and example
references/cron-setup.mdCron job creation, verification, and manual fallback procedures
references/review-compilation-workflow.mdEnd-to-end workflow for concentrated literature review writing

Pitfalls

  1. Keyword drift: Review keywords monthly — research directions evolve
  2. Score inflation: Subagents may inflate scores; always validate arithmetic
  3. Duplicate creep: Classic papers will reappear; maintain a dedup index
  4. Wiki safety: Pipeline writes to raw/ only; wiki integration is manual
  5. Cron locality: Hermes cron is local, not cloud — machine must be running

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