인프라·DevOps 스킬

Stores and operates on sparse expression matrices for single-cell and large bulk RNA-seq, covering dgCMatrix/dgRMatrix/dgTMatrix when-each-is-fast, the dgCMatrix (CSC, R) <-> CSR (Python) implicit transpose, AnnData (cells-rows) <-> SingleCellExperiment (cells-cols) orientation flip, HDF5/h5ad vs Zarr cloud-native shift, HDF5SummarizedExperiment + DelayedArray for out-of-memory bulk, scanpy backed mode for large h5ad, the ~10-15% density crossover where dense beats sparse, 10X format proliferation (MTX vs CellRanger H5 vs h5ad), the dense-conversion memory blow-up, and Dask + Zarr for consortium-scale matrices. Use when choosing sparse format, working with single-cell-sized matrices, importing/exporting 10X, debugging R/Python interop transposes, processing matrices too large for RAM, or building cloud-native pipelines.

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Creates DE-specific diagnostic and result visualizations using DESeq2/edgeR built-in functions and lightweight ggplot2 wrappers. Covers MA plot (with the shrunken-LFC compression effect), volcano (with the apeglm caveat that p-values are unchanged), PCA on VST/rlog (never raw counts), sample distance heatmaps, top-DE-gene heatmaps with the row-scaling trap, dispersion / BCV plot interpretation, p-value histogram diagnostics, plotCounts for individual genes, blind=TRUE vs FALSE rationale, and the n=3 visualization stake. Use when generating DE diagnostic plots, choosing VST vs rlog for visualization, troubleshooting suspicious plot patterns (shifted MA cloud, batch-dominated PCA, anti-conservative p-value histogram), or building a standard QC figure panel.

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Estimates bivariate genetic correlation (rg) between traits from GWAS summary statistics or individual-level genotypes using cross-trait LDSC, HDL, LAVA, rho-HESS, GREML-bivariate, Popcorn, and HDL-L. Use when quantifying shared genetic architecture between two traits, screening MR validity before causal inference, distinguishing global from locus-level rg, estimating trans-ancestry rg, separating partial from full causation via LCV gcp, or producing a STROBE-MR-compliant cross-trait sensitivity battery. Cross-trait LDSC intercept absorbs sample overlap and is NOT a bias; HDL is biased under sample overlap above ~5%. High rg between exposure and outcome motivates CHP-aware MR sensitivity (CAUSE, LHC-MR).

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AWS serverless and event-driven architecture expert based on Well-Architected Framework. Use when building serverless APIs, Lambda functions, REST APIs, microservices, or async workflows. Covers Lambda with TypeScript/Python, API Gateway (REST/HTTP), DynamoDB, Step Functions, EventBridge, SQS, SNS, and serverless patterns. Essential when user mentions serverless, Lambda, API Gateway, event-driven, async processing, queues, pub/sub, or wants to build scalable serverless applications with AWS best practices.

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Collection of AWS development skills covering CDK infrastructure as code, cost optimization, and serverless/event-driven architectures with integrated MCP servers.

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This skill provides AWS cost optimization, monitoring, and operational best practices with integrated MCP servers for billing analysis, cost estimation, observability, and security assessment.

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Master defensive Bash programming techniques for production-grade scripts. Use when writing robust shell scripts, CI/CD pipelines, or system utilities requiring fault tolerance and safety.

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AWS Cloud Development Kit (CDK) expert for building cloud infrastructure with TypeScript/Python. Use when creating CDK stacks, defining CDK constructs, implementing infrastructure as code, or when the user mentions CDK, CloudFormation, IaC, cdk synth, cdk deploy, or wants to define AWS infrastructure programmatically. Covers CDK app structure, construct patterns, stack composition, and deployment workflows.

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Deploy universal wisdom voices from all traditions simultaneously - Hindu, Buddhist, Taoist, Abrahamic, Indigenous, Scientific - revealing their unified recognition of consciousness navigation.

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Set up and manage social media tracking across Twitter, Instagram, Reddit, and TikTok using Xpoz. Add, remove, and view tracked keywords, users, subreddits, and hashtags. Use when asked to "track mentions", "monitor brand", "set up tracking", "add tracked item", "what am I tracking", "stop tracking", "remove tracked", or "social monitoring".

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Auto-activate for uv build, hatch build, PyApp, PYAPP_*, wheel assets, GitHub release matrices, cargo-zigbuild, or python-build-standalone. Not for runtime deployment.

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Auto-activate for Dockerfile, compose, Railway, Cloud Run, GKE, systemd, Kubernetes, Terraform, deploy scripts, or granian/litestar run at runtime. Not for packaging artifacts.

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A gate before git push / deploy — assembled from your own tools (secret-grep + slop-scan + code-review + build/compile + optional worktree isolation), so AI junk (slop / bugs / secrets / uncompiled code) never reaches a remote or a production server. Turns "I hope it's clean" into a verifiable criterion. Branches: web/OSS (git push/PR) vs deploy-to-server service. Triggers — "check before push", "clean push", "gate before push", "finalize before commit", "run before deploy".

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Safe deployment workflow for Drupal 10/11 sites: pre-flight checks, backup, the correct update sequence (composer install, database updates, config import, cache rebuild), verification, and rollback plan. Use when deploying to any environment, releasing to production, or when the user asks to "push changes live", "update the server", or run a release. Also use for multisite releases where each site needs its own database update pass.

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Use this skill when authoring or debugging GitLab CI/CD pipelines (.gitlab-ci.yml) — e.g. "add a CI pipeline for this Drupal project", "run phpcs/phpstan/phpunit in GitLab CI", "deploy with drush from a pipeline", "why is my job not running", "cache composer dependencies", or anything involving stages, rules, artifacts, environments, or GitLab runners.

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Use this skill when authoring or editing Docker Compose files (compose.yaml / docker-compose.yml), running multi-container stacks, or containerizing a Drupal/PHP application — e.g. "set up a local Drupal stack with nginx and MariaDB", "add Redis to my compose file", "why won't my containers start", "split dev and prod compose configuration". Also trigger for compose commands (up, down, logs, exec, watch) and healthcheck/dependency issues between services.

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Use this skill when running local AI models with Docker Model Runner — the `docker model` CLI — e.g. "run an LLM locally with Docker", "pull a model from the ai/ namespace", "connect my app to a local model", "use a local model as backend for the Drupal AI module", or when wiring the `models:` top-level element into a compose.yaml. Covers pulling/running models, OpenAI-compatible endpoints, and Compose integration.

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Reference when designing autonomous agent systems or deciding agent freedom/safety/context management/collaboration infrastructure. 10 design principles distilled from Karpathy autoresearch (autonomous ML experiment loop) + AgentHub (agent-native Git DAG). Triggered by "autoresearch", "agenthub", "ratchet" ("래칫"), "context budget", "dumb platform", "program.md", "overnight", "autonomous experiment" ("자율 실험"), "branchless", "single-file constraint" ("단일 파일 제약"), "fixed time budget" ("고정 시간 예산") keywords.

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Plan and implement infrastructure, container, CI/CD, deployment-safety, observability, and rollback changes. Does not read dotenv files or approve/release deployments.

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Routes Confluence Cloud tasks to the right mk:confluence-* leaf skill. Use for 'confluence', 'wiki page', 'spec page', or ambiguous intent. NOT an executor -- forks to a leaf skill.

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Ship workflow with explicit scopes: prepare stages and commits locally; release pushes and creates a PR; publish manages issues and versioning. Use when asked to "ship", "deploy", "push to main", "create a PR", or "merge and push". Proactively suggest when the user says code is ready or asks about deploying. Supports official (→ main) and beta (→ dev/develop) ship modes with auto-detection.

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Plan and implement infrastructure, containers, CI/CD, deployment safety, observability, and rollback changes. Use for Docker, IaC, cloud runtime, Kubernetes, pipeline, deployment, or operational reliability work. Does not read dotenv files or approve/release deployments.

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Routing skill — recommends the correct mk:confluence-* leaf for any Confluence Cloud task. Triggers: 'confluence', 'wiki page', 'spec page', ambiguous Confluence intent. NOT an executor — every actual operation forks via a leaf skill.

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Diagnoses and fixes bugs, type errors, lint failures, CI/CD issues, and runtime errors via root-cause-first investigation. Use for defect remediation. NOT for investigation without a fix (see mk:investigate); NOT for build-only compilation errors (see mk:build-fix).

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