리서치·학습 스킬

Search UniProt for proteins by name, gene, or organism and retrieve sequences and functional annotations. Supports FASTA, a text format for sequences, identifier conversion between databases, batch retrieval, and downloads of large result sets through its REST API.

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• Search proteins by gene name and organism
• Retrieve protein sequences in FASTA format
• Convert identifiers between UniProt and other databases

Investigate web topics through repeated searches, page visits, link following, and evidence checks. Produce a structured report with source records, working notes, and an action log that lets readers review how findings were reached.

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• Research competitors across multiple web sources
• Investigate technical topics by following links
• Create research reports with traceable evidence

Organize paper or report submissions with stage-specific checklists and templates. Link checks to actual files, prepare cover letters, and track each reviewer comment alongside the response, revision, and location of the change.

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• Checking a manuscript before submission
• Organizing submission files and cover letters
• Tracking responses to reviewer comments

Prepare journal papers, conference submissions, and research posters using venue-specific LaTeX templates, a document typesetting format. Customize author details and check requirements such as page limits, margins, fonts, and anonymous review formatting.

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• Preparing a manuscript for a specific journal
• Checking conference formatting and anonymity requirements
• Choosing a research poster template

Automates computational chemistry through Rowan's Python API, including molecular property prediction, structure optimization, and protein–ligand binding predictions. Submits cloud calculations, handles batches of molecules, tracks workflow status, and retrieves results without a local compute cluster.

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• Batch prediction of molecular pKa values in Rowan
• Optimizing molecular structures and comparing conformers in Rowan
• Predicting protein–ligand binding and complex structures in Rowan

Prepare a complete scholarly publication package, from manuscript sources and submission attachments to reviewer responses and final files. Organize journal or conference requirements, figure specifications, revision tracking, and repeatable build steps around one authoritative manuscript source.

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• Preparing a journal or conference submission package
• Organizing point-by-point responses to reviewers
• Checking final files before publication

Draft research funding proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Organize research aims, methods, budgets, timelines, and societal benefits around each agency’s application format and review criteria.

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• Drafting a research funding proposal
• Explaining research significance and innovation
• Preparing budget justifications and timelines

Review papers, research proposals, and literature reviews with the ScholarEval framework. Assess research questions, methods, analysis, writing, and references, then produce evidence-based feedback with prioritized improvements and optional scores for each relevant dimension.

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• Review a paper before journal or conference submission
• Assess research questions and methodology
• Evaluate the coverage and synthesis of a literature review

Explore research ideas through conversation, question existing assumptions, and connect methods across disciplines. The skill helps identify research gaps, compare ways to combine papers, and summarize promising directions with practical next steps.

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• Explore new research topics and directions
• Find connections across scientific disciplines
• Question assumptions in existing research

Evaluate scientific papers and claims by examining study design, statistics, bias, and the strength of supporting evidence. Helps distinguish supported conclusions from overstatements and provides constructive recommendations for improving research methods and interpretation.

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• Assessing the evidence behind a paper's conclusions
• Finding bias and statistical interpretation errors
• Comparing studies with conflicting findings

Manage Zotero reference libraries through Python: search, create, update, and delete records, organize collections and tags, upload PDF attachments, and export citation data for research workflows.

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• Searching and organizing a reference library
• Adding references and updating bibliographic details
• Uploading PDF attachments to references

Build research and technical reports with clear summaries, reproducible methods, results, and discussion. Connect conclusions to supporting figures or calculations, apply consistent figure standards, and prepare Markdown, HTML, or PDF deliverables.

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• Structure a research or technical report
• Document methods and parameters for reproducibility
• Check figure readability and links to conclusions

Find academic papers, statistics, and technical documentation with citations for writing and fact checking. The skill selects a search or reasoning model based on the question, supporting both straightforward lookups and comparisons across studies.

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• Finding papers to cite in a manuscript
• Checking claims and statistics against research
• Comparing findings across multiple studies

Choose a mathematical approach for a problem you do not yet know how to model. Guided questions clarify change, uncertainty, optimization goals, and required precision, leading to a recommended framework, starting equations, tools, and related skills.

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• Choosing a mathematical approach for a real-world problem
• Deciding how to model discrete or continuous change
• Selecting methods for uncertainty or optimization

Work with crystal structures and materials calculations in Python. Convert structure files, examine symmetry and stability, analyze electronic properties, prepare calculation inputs, and retrieve computed materials data from Materials Project using pymatgen and its supporting tools.

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• Convert crystal structure files between CIF and POSCAR
• Analyze crystal symmetry and neighboring atoms
• Create phase diagrams and assess material stability

Handle equations, calculus, matrices, unit conversions, and mathematical explanations through one entry point. The skill selects a suitable calculation tool or topic guide, including symbolic math tools that work directly with expressions.

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• Solve equations and calculate integrals
• Find matrix eigenvalues
• Convert between units

Analyze Neuropixels neural recordings from raw data through quality review. Supports preprocessing, motion correction, spike sorting to separate signals by neuron, quality metrics, visual inspection, reports, and exports for further review or data sharing.

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• Preprocess recordings and correct probe drift
• Separate neural signals with Kilosort4
• Select units using Allen or IBL quality criteria

Screen compound collections for drug discovery using established drug-likeness rules, structural warnings, and molecular complexity measures. Detect relevant chemical groups, apply property limits, and generate filtering results to support compound selection and prioritization.

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• Screening compound collections for drug-like candidates
• Detecting potentially problematic structures
• Prioritizing compounds during lead optimization

Analyze propositional formulas and arguments using truth tables, deduction rules, and branching proof trees. Classify formulas as always true, always false, or dependent on their inputs, and check whether an argument follows from its premises.

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• Classifying formulas with truth tables
• Checking whether a formula can be true
• Verifying arguments with deduction rules

Search NIH Metabolomics Workbench for metabolite structures, study details, and experimental data. Standardize metabolite names with RefMet, find candidate compounds from mass spectrometry measurements, and filter studies by disease, sample source, or analytical method.

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• Finding studies that measure a specific metabolite
• Standardizing metabolite names with RefMet
• Finding compound candidates from mass spectrometry measurements

Perform arithmetic, algebra, calculus, matrix operations, number theory, and statistics with SymPy, a symbolic mathematics library. Return exact expressions, numerical values, and LaTeX notation for checking calculations or using results in other work.

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• Calculate exact fractions and roots
• Simplify expressions and solve equations
• Check derivatives, integrals, and limits

Provides a starting structure for work on formal logic and mathematical foundations, with source checks and a review of unresolved gaps. The material is a legacy template awaiting research and validation.

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• Reviewing sources for formal logic topics
• Checking unresolved gaps before using topic modules
• Planning validation of mathematical foundations material

Write structured reviews of scientific manuscripts and grant proposals. Assess methods, statistics, reproducibility, ethics, and reporting completeness, then organize strengths, major concerns, minor issues, and specific suggestions into constructive feedback.

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• Drafting a journal manuscript review
• Reviewing a research grant proposal
• Checking methods and statistical reporting before revision

Search scholarly literature in OpenAlex by topic, author, or institution. Explore citation counts and publication trends, find freely accessible papers, and export research records to CSV for further analysis.

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• Finding papers on a research topic
• Reviewing an author's or institution's publications
• Tracking publication trends and citations