501건 · 관련도순
The Bandle package enables the analysis and visualisation of differential localisation experiments using mass-spectrometry data. Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT, Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure to analyse these data.
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The QFeatures infrastructure enables the management and processing of quantitative features for high-throughput mass spectrometry assays. It provides a familiar Bioconductor user experience to manages quantitative data across different assa
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Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.
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tags: [bioconductor, r, proteomics, vignette-grounded]
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hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based ce
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Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes f
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This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated me
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Extract the genomic locations of genes, transcripts, exons, introns, and CDS, for the gene models stored in a TxDb object. A TxDb object is a small database that contains the gene models of a given organism/assembly. Bioconductor provides a
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Harmonize data management of multiple experimental assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of st
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The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor
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ChIPseeker is a Bioconductor package for annotating ChIP-seq data analysis. Peak Annotation is performed by the annotatePeak function. The position and strand information of nearest genes are reported, in addition to the distance from the p
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Think and work like an expert Biochemist. Use when a task calls for Biochemist judgment. Reasons from thermodynamics, enzyme mechanisms, and binding energetics; designs orthogonal purification and assay readouts while controlling oxidation, aggregation, coupled assays, and activity-vs-abundance confounds.
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Analyze indicators of compromise — enrichment, attribution, and response recommendations. Use when asked to "analyze these IOCs", "enrich these indicators", or "what is this hash".
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Indicator pivoting methodology — how to use one known indicator to discover related infrastructure across the IOC graph. Decision tree by indicator type with concrete `/lookup-*` commands per pivot, a worked multi-hop example, pivot-quality scoring, and routing into the rigor pipeline. Use when the user asks "what else is connected to this IP / domain / hash / cert / actor?", needs to expand a single seed IOC into a campaign cluster, or wants the canonical reference for graph-walking IOCs.
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IOC export formats and procedures. CSV, STIX 2.1, OpenIOC, MISP. Handles format conversion and packaging, and carries per-claim evidence grades (access level and claim support) from /quality-of-information-check into each format (STIX confidence, MISP attribute tags).
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Enriches indicators with context from threat-intel sources: planning lookups against reputation, passive DNS, WHOIS, and sandbox/sample databases, scoring confidence, and avoiding operational-security mistakes that tip off adversaries. Activates for requests to enrich IOCs, add threat context, or plan indicator lookups safely.
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Extracts indicators of compromise from raw analysis artifacts: parsing strings dumps, sandbox reports, PCAP summaries, and logs for URLs, domains, IPs, hashes, mutexes, and file paths, then deduplicating and typing them. Activates for requests to extract IOCs from analysis output, pull indicators from a report, or harvest atomic indicators.
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Prepares indicators of compromise for safe sharing: defanging URLs, domains, IPs, and emails so they cannot be accidentally clicked or resolved, and formatting them into STIX/CSV/MISP-friendly output. Activates for requests to defang IOCs, sanitize indicators for a report, or export indicators for sharing.
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OpenCTI is an open-source platform for managing cyber threat intelligence knowledge, built on STIX 2.1 as its native data model. This skill covers building an automated IOC enrichment pipeline using O
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Expert en AudioCraft avancé (MusicGen text-to-music, AudioGen text-to-sound, fine-tuning)
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OpenCTI is an open-source platform for managing cyber threat intelligence knowledge, built on STIX 2.1 as its native data model. This skill covers building an automated IOC enrichment pipeline using O
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OpenCTI is an open-source platform for managing cyber threat intelligence knowledge, built on STIX 2.1 as its native data model. This skill covers building an automated IOC enrichment pipeline using O
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Simulate concentration changes over time from biochemical models in SBML or Antimony, and compare fixed parameter conditions. Checks model units and exports CSV results plus COMBINE archives containing models and experiment settings, then replays them to compare results.
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Build incident response dashboards that bring affected systems, containment progress, indicators of compromise, and response timelines into one view. Help security teams coordinate active incidents and prepare operational reports and executive briefings.
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