Current version only works in 'merge' mode: A single table of gene summarizations is generated with one column for each sample file.
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Current version only works in 'merge' mode: A single table of gene summarizations is generated with one column for each sample file.
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Tools for LiP peptide and protein significance analysis. Provides functions for summarization, estimation of LiP peptide abundance, and detection of changes across conditions. Utilizes functionality across the MSstats family of packages.
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Adaptive content summarization - auto-detect content type and produce relevant summary
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Proje bilgisini 4 katmanli yapida organize et. Aktif projeler, sorumluluk alanlari, referans kaynaklar ve arsiv. Progressive summarization ile bilgiyi katman katman ozumse. Second brain pattern'i ile codebase bilgisini yapilandir.
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Guides technology selection and implementation of AI and ML features in .NET 8+ applications using ML.NET, Microsoft.Extensions.AI (MEAI), Microsoft Agent Framework (MAF), GitHub Copilot SDK, ONNX Runtime, and OllamaSharp. Covers the full spectrum from classic ML through modern LLM orchestration to local inference. Use when adding classification, regression, clustering, anomaly detection, recommendation, LLM integration (text generation, summarization, reasoning), RAG pipelines with vector search, agentic workflows with tool calling, Copilot extensions, or custom model inference via ONNX Runtime to a .NET project. DO NOT USE FOR projects targeting .NET Framework (requires .NET 8+), the task is pure data engineering or ETL with no ML/AI component, or the project needs a custom deep learning training loop (use Python with PyTorch/TensorFlow, then export to ONNX for .NET inference).
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Performs deep AI-powered analysis and understanding of long-form videos (up to 3 hours, 10GB) using Volcengine LAS large language models. Video analysis, video comprehension, and video summarization — generates comprehensive video summaries, video recaps, chapter breakdowns, event timelines, key moments, and structured content indexing. Supports behavior detection, action detection, video annotation, video tagging, and video content recognition. Enables intelligent video question answering — ask questions about video content and get AI answers. Handles long meeting recordings, lecture videos, webinars, surveillance and security footage, movies, tutorials, and any long video that needs detailed understanding. Async processing with submit-poll workflow. Use this skill when the user wants to analyze or understand long videos (up to 3h/10GB) with LLM-based deep comprehension, summarize video content or generate recaps, extract chapters/key moments/timelines from videos, do video Q&A (ask questions about video content), detect actions/behaviors in videos, review meeting recordings/lectures/webinars, or get structured video descriptions.
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Launch and continue the Volcengine AI Research survey workflow for concept testing, audience design, questionnaire drafting, interview guide generation, execution confirmation, progress checks, and result queries. Use this skill when the user wants to create, revise, confirm, execute, or follow up on a real AI research survey task in ABCompass instead of doing generic brainstorming, copywriting, translation, summarization, or broad market discussion.
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Automatically fetch YouTube video transcripts, generate structured summaries, and send full transcripts to messaging platforms. Detects YouTube URLs and provides metadata, key insights, and downloadable transcripts.
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Intelligent pattern selection for Fabric CLI. Automatically selects the right pattern from 242+ specialized prompts based on your intent - threat modeling, analysis, summarization, content creation, extraction, and more. USE WHEN processing content, analyzing data, creating summaries, threat modeling, or transforming text.
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Process and generate multimedia content using Google Gemini API. Capabilities include analyze audio files (transcription with timestamps, summarization, speech understanding, music/sound analysis up to 9.5 hours), understand images (captioning, object detection, OCR, visual Q&A, segmentation), process videos (scene detection, Q&A, temporal analysis, YouTube URLs, up to 6 hours), extract from documents (PDF tables, forms, charts, diagrams, multi-page), generate images (text-to-image, editing, composition, refinement). Use when working with audio/video files, analyzing images or screenshots, processing PDF documents, extracting structured data from media, creating images from text prompts, or implementing multimodal AI features. Supports multiple models (Gemini 2.5/2.0) with context windows up to 2M tokens.
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HuggingFace Transformers with biomedical LMs (BioBERT, PubMedBERT, BioGPT, BioMedLM) for scientific NLP: NER (genes, diseases, chemicals), relation extraction, QA, text classification, abstract summarization. Covers loading, biomedical tokenization, inference pipelines, fine-tuning. Alternatives: spaCy en_core_sci_lg (rule-based NER), Stanza (biomedical models), NLTK.
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Summarizes recent git changes for context recovery after session breaks. Use when resuming work after a gap or handing off to another session.
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AI-powered presentation generation via the 2slides API — create slides from text, match a reference image style, summarize documents into decks, add AI voice narration, and export pages/audio. Use for any "make slides", "create a deck", or "slides from this document" request.
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Fetch transcripts from YouTube videos for summarization and analysis.
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Fetches AI news from smol.ai RSS and generates structured markdown with intelligent summarization and categorization. Optionally creates beautiful HTML webpages with Apple-style themes and shareable card images. Use when user asks about AI news, daily tech updates, or wants news organized by date or category.
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Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.
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Extract full transcripts and captions from YouTube videos for content analysis, summarization, note-taking, and repurposing. Supports multiple languages and auto-generated captions. Ideal for research, content creation, and accessibility workflows.
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Parse and extract structured content from PDFs, Word documents, and other file formats. Converts documents into clean, machine-readable text for analysis, summarization, data extraction, and content processing workflows.
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Extract keywords from documents using YAKE algorithm with support for 34 languages (Arabic to Chinese). Use when users request keyword extraction, key terms, topic identification, content summarization, or document analysis. Includes domain-specific stopwords for AI/ML and life sciences. Optional deeper extraction mode (n=2+n=3 combined) for comprehensive coverage.
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Design local AI engines for iOS. Use when wiring Apple Foundation Models, local classifiers, extraction, summarization, grounded answers, and cloud fallbacks.
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Use for every task that plans, writes, edits, debugs, tests, refactors, reviews, or maintains code. Apply to professional repositories, scripts, apps, services, prototypes, beginner work, vibe coding, and bounded code changes inside large systems. Choose the fewest clear lines, files, paths, states, and abstractions that correctly implement the requested behavior. Do not invent fallbacks, compatibility paths, defensive layers, or future scale without evidence. Do not use for ordinary conversation, emotional support, prose, translation, summarization, social-media content, or general research or technical discussion that is not part of planning, changing, or reviewing code. Never weaken real security, integrity, concurrency, compatibility, privacy, accessibility, legal, or regulatory requirements.
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Run a Meta-Harness-style optimization loop NATIVELY — automatically search over the scaffolding around a FIXED base model (memory, retrieval, context construction, prompt templates, summarization, tool-selection logic) by proposing candidate variants, scoring each on a cheap deterministic eval, and keeping a Pareto frontier of quality vs cost — using native Agent / Workflow / loop tools instead of a standalone Python harness. Use this whenever the user wants to optimize, evolve, tune, distill, or search over a harness, scaffold, prompt system, memory or retrieval policy, context-assembly code, or summarizer while keeping the model fixed; whenever they mention Meta-Harness, harness optimization, scaffold evolution, automatic prompt/memory optimization, an evolutionary or Pareto search over candidate implementations, or "make the harness/agent better without retraining"; and whenever the gain must come from the code AROUND the model rather than the model weights. Reproduces the Meta-Harness paper's method natively, with no claude_wrapper.py and no metered solver API.
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AI-powered automated code review, PR summarization, and interactive developer feedback / Review kode otomatis berbasis AI, ringkasan PR, dan umpan balik developer interaktif.
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Delegate long-context analysis, research, and large-document summarization to Google Gemini CLI (1M-token context) via non-interactive `gemini -p`, preserving Claude context. Use when the user says 'use gemini'/'hand off to gemini' or a task needs 100K+ tokens of context.
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